BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0456900 Os09g0456900|AK073236
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08020.1  | chr5:2572107-2574879 FORWARD LENGTH=605             55   3e-08

>AT5G08020.1 | chr5:2572107-2574879 FORWARD LENGTH=605
          Length = 604

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 13  TKMVTTLISKLEPGLGNPTIRLRVSR---FWEFRDQNDENILYHLGLVLVDGTGASIAAQ 69
           T+ V  L+S L P  G+ TI++RV+       +++   E  ++++ L   D  G  I A 
Sbjct: 154 TRRVHPLVS-LNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELT--DEEGTQIQAT 210

Query: 70  IMPPLDELFAPAITEGKVYDLTFYRVRQCTSQYRPVGNMQSIALTKWSTLEECTDVPENF 129
           +       F      GKVY ++   ++    Q++ V N   + L + S +EE ++     
Sbjct: 211 MFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFT 270

Query: 130 PNYVYSLTPYDQLRGRVNRKDSFTDAIGIITEITSVTPIQTRTKDGESL-KRSIYIRD 186
           P   ++  P D+L   VN+KD   D IG++  ++    I+ R  D E + KR I + D
Sbjct: 271 PETKFNFVPIDELGTYVNQKD-LIDVIGVVQSVSPTMSIR-RKNDNEMIPKRDITLAD 326



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,419,172
Number of extensions: 176556
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)