Os09g0450200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0450200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.79 | 0.3 | 10.3 | 0.271 | 0.562 | -0.193 | -0.456 | 4.99 | -0.132 | 10.6 | 29.6 | 655 | -- | -- |
| 41.18 | 0.299 | 10.4 | -0.149 | 0.484 | 0.494 | -0.481 | -- | -0.171 | 9.89 | 27.69 | 106 | -- | -- |
| 41.6 | 0.3 | 10.3 | 0.288 | 0.57 | -0.207 | -- | 5.39 | -0.128 | 10.5 | 29.5 | 659 | -- | -- |
| 42.25 | 0.303 | 10.4 | -0.166 | 0.5 | 0.476 | -- | -- | -0.167 | 10.1 | 27.7 | 121 | -- | -- |
| 56.23 | 0.351 | 10.4 | -0.301 | -- | 0.89 | -- | -2.39 | -0.179 | -- | 28.7 | 801 | -- | -- |
| 43.95 | 0.311 | 10.4 | -0.0878 | 0.515 | -- | -0.576 | -- | -0.168 | 11.2 | -- | -- | -- | -- |
| 45.36 | 0.315 | 10.4 | -0.112 | 0.518 | -- | -- | -- | -0.17 | 11.1 | -- | -- | -- | -- |
| 54.63 | 0.346 | 10.4 | -0.229 | -- | 0.565 | -- | -- | -0.263 | -- | 21.1 | 6 | -- | -- |
| 42.83 | 0.305 | 10.4 | -- | 0.532 | 0.448 | -- | -- | -0.144 | 10.2 | 28.52 | 213 | -- | -- |
| 62.1 | 0.368 | 10.4 | -0.124 | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
| 45.69 | 0.316 | 10.4 | -- | 0.519 | -- | -- | -- | -0.158 | 11.1 | -- | -- | -- | -- |
| 55.77 | 0.349 | 10.4 | -- | -- | 0.556 | -- | -- | -0.174 | -- | 25.8 | 2 | -- | -- |
| 62.5 | 0.369 | 10.4 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.65 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 2 | 39.72 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 4 | 39.77 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 6 | 39.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 9 | 39.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 13 | 39.77 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 22 | 39.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 23 | 39.77 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 24 | 39.77 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 33 | 39.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 36 | 39.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 38 | 39.85 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 42 | 39.94 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 47 | 39.97 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 50 | 39.99 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 53 | 40.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 57 | 40.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 60 | 40.05 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 15 |
| 75 | 40.13 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 76 | 40.14 | temperature | 30.0 | 270 | < th | dose independent | sin | 23 | NA |
| 78 | 40.15 | temperature | 30.0 | 720 | < th | dose independent | sin | 7 | NA |
| 79 | 40.16 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 82 | 40.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 18 |
| 86 | 40.19 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 90 | 40.21 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 98 | 40.28 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 102 | 40.28 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 111 | 40.29 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 112 | 40.30 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 116 | 40.31 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 117 | 40.31 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 19 |
| 124 | 40.32 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 126 | 40.33 | humidity | 80.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 128 | 40.33 | radiation | 20.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 146 | 40.34 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 149 | 40.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 150 | 40.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 155 | 40.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 157 | 40.35 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 158 | 40.35 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 162 | 40.35 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 164 | 40.35 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 171 | 40.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 172 | 40.35 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 173 | 40.35 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 177 | 40.36 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 182 | 40.36 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 184 | 40.36 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 190 | 40.38 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 193 | 40.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 23 |
| 196 | 40.40 | temperature | 30.0 | 720 | > th | dose independent | rect. | 9 | 5 |
| 215 | 40.41 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 218 | 40.42 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 227 | 40.46 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 228 | 40.47 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 229 | 40.47 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 9 |
| 236 | 40.49 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 243 | 40.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 249 | 40.52 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 251 | 40.52 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 9 |
| 253 | 40.53 | temperature | 30.0 | 720 | > th | dose independent | sin | 5 | NA |
| 257 | 40.53 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 260 | 40.53 | temperature | 30.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 263 | 40.53 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 9 | 7 |
| 278 | 40.54 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 3 |
| 304 | 40.56 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 12 | 9 |
| 316 | 40.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 330 | 40.58 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 331 | 40.58 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 353 | 40.60 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 361 | 40.61 | atmosphere | 1005.0 | 90 | > th | dose independent | sin | 20 | NA |
| 364 | 40.61 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 365 | 40.62 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 429 | 40.64 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 10 |
| 445 | 40.65 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 454 | 40.65 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 13 | 22 |
| 502 | 40.70 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 509 | 40.71 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 516 | 40.71 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 540 | 40.72 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 6 |
| 549 | 40.73 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 555 | 40.74 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 595 | 40.76 | radiation | 30.0 | 720 | > th | dose independent | rect. | 14 | 19 |
| 598 | 40.76 | humidity | 60.0 | 30 | > th | dose dependent | sin | 20 | NA |
| 603 | 40.77 | temperature | 30.0 | 270 | > th | dose independent | sin | 23 | NA |
| 613 | 40.77 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 616 | 40.78 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 8 |
| 622 | 40.78 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 629 | 40.79 | radiation | 30.0 | 720 | > th | dose independent | rect. | 15 | 17 |
| 634 | 40.79 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 651 | 40.80 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 657 | 40.80 | temperature | 30.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 666 | 40.81 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 11 | 12 |
| 716 | 40.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 718 | 40.84 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 759 | 40.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 761 | 40.85 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 791 | 40.86 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 13 | 15 |
| 803 | 40.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 16 |
| 807 | 40.87 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 814 | 40.88 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 822 | 40.88 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 823 | 40.89 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 826 | 40.89 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 923 | 40.89 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 13 | 13 |
| 936 | 40.90 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 13 | 11 |
| 940 | 40.90 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 941 | 40.90 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 962 | 40.92 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 996 | 40.92 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 3 | 5 |