BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0450200 Os09g0450200|AK068872
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38490.1  | chr4:18006385-18007203 FORWARD LENGTH=154          113   3e-26

>AT4G38490.1 | chr4:18006385-18007203 FORWARD LENGTH=154
          Length = 153

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 72/91 (79%), Gaps = 1/91 (1%)

Query: 57  VAARGHGRQELRAGQYQLDDDEPLWLAVVRDITWGLRSFLAFLAEQPRQLKHLEWPGFRN 116
           V + G  R+   +   +L ++EPLWL+++RD+ W  RS L+F+AEQP QLK++EWP F +
Sbjct: 57  VGSVGSARESW-SSHKKLPEEEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPTFAS 115

Query: 117 TLRTATLTLILVAVFIVALSSVDAALCYILS 147
           TL+TATL+L LVAVFIVALSSVDAALCYIL+
Sbjct: 116 TLKTATLSLCLVAVFIVALSSVDAALCYILA 146



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,013,242
Number of extensions: 112493
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)