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Os09g0449400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.67 (0.0342) R2 : 0.593
β1 : -1.12 (0.127) R2dD : 0.0798 R2D : 0.125
β2 : 1.4 (0.0804) R2dC : 0.259 R2C : 0.248
β3 : -0.18 (0.211) R2dE : 0.000902 R2E : 0.000134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.45 (0.764) R2dD*E : 0.0939 R2D*E : 0.112
γ1 : 0.694 (0.0725) R2dN8 : 0.112 R2N8 : 0.124
σ : 0.631
deviance : 183.63
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_____
C
peak time of C : 0.616
E
wheather : precipitation
threshold : 0.2229
memory length : 4383
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.5
open length of G : 2.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.95 0.614 5.69 -1.08 1.39 -0.187 1.75 -7.06 0.675 0.73 0.165 4498 20.5 2.52
204.42 0.666 5.68 -1.05 1.38 -0.446 1.74 -- 0.578 0.303 0.1978 47520 19.6 1.71
183.63 0.631 5.67 -1.12 1.4 -0.18 -- -7.45 0.694 0.616 0.2229 4383 20.5 2.72
205.64 0.668 5.66 -0.748 1.34 -0.732 -- -- 0.505 0.501 0.3416 43418 20 1.17
297.32 0.803 5.66 -1.07 -- -0.576 -- -7.99 0.658 -- 0.3177 3796 20.7 2.98
214.12 0.686 5.63 -1.31 1.39 -- 1.64 -- 0.697 0.606 -- -- -- --
225.59 0.703 5.63 -1.37 1.38 -- -- -- 0.689 0.54 -- -- -- --
319.68 0.833 5.65 -0.686 -- -0.869 -- -- 0.561 -- 0.3032 42718 20 1.19
214.77 0.683 5.64 -- 1.33 -0.961 -- -- 0.604 0.0705 0.4464 43856 19.9 1.46
345.63 0.869 5.61 -1.33 -- -- -- -- 0.713 -- -- -- -- --
275.4 0.776 5.6 -- 1.36 -- -- -- 0.842 0.49 -- -- -- --
325.51 0.84 5.64 -- -- -0.978 -- -- 0.61 -- 0.4611 42823 19.8 1.42
392.05 0.924 5.57 -- -- -- -- -- 0.86 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.21 precipitation 0.1 4320 > th dose dependent rect. 20 2
4 174.20 precipitation 0.1 4320 < th dose independent rect. 21 1
5 174.20 precipitation 0.1 4320 < th dose dependent rect. 21 1
6 174.23 precipitation 0.1 4320 > th dose independent rect. 21 1
59 184.82 wind 5.0 14400 < th dose independent rect. 11 2
60 184.94 wind 5.0 14400 > th dose independent rect. 11 2
78 186.40 precipitation 0.1 4320 > th dose independent rect. 17 7
80 186.73 precipitation 0.1 4320 < th dose independent rect. 17 7
81 186.73 precipitation 0.1 4320 < th dose dependent rect. 17 7
83 186.79 atmosphere 1010.0 270 < th dose dependent rect. 8 6
90 187.42 wind 5.0 4320 > th dose dependent rect. 21 4
106 187.94 atmosphere 1010.0 270 < th dose dependent rect. 9 4
112 188.20 atmosphere 1010.0 10 < th dose dependent rect. 9 7
114 188.44 wind 5.0 4320 > th dose independent rect. 19 8
119 188.61 radiation 1.0 43200 < th dose dependent rect. 1 3
126 188.81 wind 5.0 4320 < th dose independent rect. 19 7
130 189.07 wind 7.0 4320 > th dose independent rect. 21 4
131 189.15 precipitation 0.1 43200 > th dose dependent rect. 20 2
132 189.21 radiation 1.0 43200 < th dose dependent rect. 23 1
136 189.26 wind 5.0 4320 < th dose dependent rect. 20 1
151 189.67 radiation 1.0 43200 < th dose dependent rect. 23 5
157 189.78 atmosphere 995.0 43200 > th dose independent rect. 16 1
161 189.84 wind 7.0 4320 > th dose dependent rect. 21 1
165 189.87 radiation 1.0 43200 < th dose dependent rect. 21 7
168 189.95 atmosphere 995.0 43200 < th dose independent rect. 16 1
170 189.96 atmosphere 995.0 43200 < th dose dependent rect. 16 1
179 190.00 radiation 40.0 90 < th dose independent rect. 3 9
204 190.22 radiation 1.0 43200 < th dose dependent rect. 1 1
213 190.31 atmosphere 1005.0 270 < th dose independent rect. 7 8
215 190.35 wind 3.0 14400 > th dose dependent rect. 11 1
232 190.53 wind 7.0 4320 > th dose independent rect. 21 1
241 190.59 wind 3.0 4320 > th dose dependent rect. 19 8
245 190.63 atmosphere 1010.0 90 < th dose dependent rect. 11 4
248 190.68 radiation 40.0 270 < th dose independent rect. 1 10
262 190.83 wind 3.0 43200 > th dose independent rect. 24 1
264 190.83 wind 3.0 43200 < th dose independent rect. 21 4
265 190.84 atmosphere 995.0 43200 < th dose independent rect. 15 8
266 190.88 wind 3.0 43200 > th dose independent rect. 21 4
286 191.07 wind 7.0 1440 < th dose independent rect. 21 10
300 191.24 humidity 50.0 4320 > th dose independent rect. 12 5
345 191.58 radiation 40.0 90 < th dose independent rect. 3 22
351 191.60 humidity 50.0 4320 < th dose independent rect. 12 5
353 191.62 precipitation 0.1 43200 > th dose independent rect. 20 2
355 191.63 wind 3.0 4320 > th dose independent rect. 20 1
357 191.63 atmosphere 995.0 43200 < th dose dependent rect. 14 2
361 191.65 atmosphere 995.0 43200 < th dose independent rect. 13 2
365 191.66 atmosphere 995.0 43200 < th dose independent rect. 12 4
372 191.69 precipitation 0.1 43200 < th dose independent rect. 20 2
377 191.69 precipitation 0.1 43200 < th dose dependent rect. 20 2
384 191.71 atmosphere 995.0 43200 > th dose independent rect. 6 10
390 191.74 atmosphere 995.0 43200 > th dose independent rect. 8 8
396 191.76 atmosphere 995.0 43200 < th dose dependent rect. 15 8
398 191.77 atmosphere 995.0 43200 > th dose independent rect. 12 3
429 191.85 atmosphere 1005.0 720 > th dose independent rect. 7 1
434 191.87 wind 7.0 1440 > th dose independent rect. 21 11
438 191.89 humidity 50.0 4320 < th dose independent rect. 16 22
439 191.89 wind 1.0 4320 > th dose dependent rect. 20 1
477 192.00 temperature 25.0 270 > th dose independent rect. 9 4
561 192.21 atmosphere 995.0 43200 > th dose independent sin 23 NA
562 192.21 atmosphere 995.0 43200 < th dose independent sin 23 NA
619 192.32 temperature 20.0 270 > th dose dependent rect. 9 4
670 192.38 temperature 20.0 30 > th dose dependent rect. 9 7
671 192.39 wind 7.0 1440 > th dose dependent rect. 21 12
678 192.42 humidity 50.0 4320 > th dose independent rect. 13 1
685 192.45 atmosphere 1010.0 270 < th dose dependent rect. 11 1
698 192.50 precipitation 0.1 4320 > th dose independent rect. 11 13
711 192.56 precipitation 0.1 4320 < th dose independent rect. 11 13
715 192.56 precipitation 0.1 4320 < th dose dependent rect. 11 13
720 192.58 humidity 50.0 4320 > th dose independent rect. 12 20
738 192.61 humidity 50.0 4320 > th dose independent rect. 12 17
789 192.74 wind 1.0 4320 < th dose independent rect. 5 1
793 192.75 humidity 50.0 4320 > th dose independent rect. 12 12
799 192.78 temperature 25.0 10 > th dose independent rect. 9 7
807 192.81 wind 7.0 1440 > th dose independent rect. 24 8
824 192.85 wind 7.0 1440 > th dose dependent rect. 24 8
847 192.93 wind 7.0 1440 > th dose dependent rect. 24 5
881 192.99 wind 7.0 1440 > th dose independent rect. 24 5
890 193.00 wind 1.0 4320 < th dose dependent rect. 5 1
892 193.01 wind 3.0 43200 < th dose dependent rect. 9 1
900 193.03 wind 7.0 4320 > th dose independent rect. 23 2
919 193.09 wind 5.0 14400 > th dose dependent rect. 9 5
931 193.14 atmosphere 1005.0 720 > th dose independent rect. 3 6
948 193.19 atmosphere 1015.0 4320 < th dose independent rect. 5 1
958 193.21 atmosphere 995.0 43200 > th dose independent sin 16 NA
992 193.28 atmosphere 1015.0 4320 > th dose dependent rect. 4 1