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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0445600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0346) R2 : 0.339
β1 : -0.333 (0.133) R2dD : 0.0105 R2D : 0.0351
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.31 (0.123) R2dE : 0.173 R2E : 0.174
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.26 (0.381) R2dD*E : 0.12 R2D*E : 0.153
γ1 : 0.188 (0.0757) R2dN8 : 0.0125 R2N8 : -0.00858
σ : 0.642
deviance : 189.98
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.66
memory length : 269
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.02
open length of G : 0.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.94 0.637 3.11 -0.34 0.358 1.14 0.0712 -3.21 0.164 6.79 23.66 271 6.99 1.03
202.17 0.662 3.14 -0.563 0.31 1.15 -2.16 -- 0.105 8.76 23.6 261 7.15 0.883
183.87 0.632 3.11 -0.346 0.358 1.15 -- -3.21 0.161 6.84 23.69 269 6.99 1.02
213.95 0.681 3.15 -0.737 0.337 1.14 -- -- 0.0584 7.29 23.6 265 7.17 0.85
189.98 0.642 3.12 -0.333 -- 1.31 -- -3.26 0.188 -- 23.66 269 7.02 0.95
228.8 0.709 3.17 -0.736 0.665 -- -2.13 -- -0.0794 8.96 -- -- -- --
244.08 0.732 3.17 -0.812 0.682 -- -- -- -0.0824 8.59 -- -- -- --
220.27 0.691 3.15 -0.692 -- 1.35 -- -- 0.1 -- 23.64 263 7.17 0.833
227.07 0.702 3.15 -- 0.366 1.24 -- -- 0.113 6.68 23.7 265 7.19 0.862
270.21 0.768 3.19 -0.809 -- -- -- -- -0.0763 -- -- -- -- --
261.44 0.756 3.15 -- 0.679 -- -- -- 0.00798 8.68 -- -- -- --
232.3 0.71 3.13 -- -- 1.37 -- -- 0.187 -- 23.7 264 7.23 0.799
287.49 0.791 3.17 -- -- -- -- -- 0.0135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.35 temperature 25.0 270 < th dose independent rect. 7 1
2 189.58 temperature 25.0 90 < th dose independent rect. 6 5
3 191.79 temperature 25.0 270 < th dose independent rect. 4 6
5 193.30 temperature 25.0 270 < th dose independent rect. 6 3
28 202.40 radiation 40.0 10 < th dose independent rect. 10 21
32 202.72 temperature 25.0 10 < th dose independent rect. 7 3
48 204.39 radiation 20.0 10 < th dose independent sin 9 NA
54 204.96 radiation 30.0 10 < th dose dependent sin 7 NA
59 205.16 radiation 10.0 90 < th dose independent rect. 23 14
67 205.85 radiation 10.0 90 < th dose independent rect. 23 16
69 205.93 radiation 10.0 90 < th dose independent sin 8 NA
77 206.32 temperature 30.0 90 < th dose dependent rect. 6 5
82 206.61 temperature 25.0 270 < th dose independent sin 4 NA
84 206.72 wind 1.0 90 > th dose independent rect. 6 17
87 206.78 temperature 25.0 270 > th dose independent sin 4 NA
94 207.05 radiation 1.0 10 > th dose dependent sin 8 NA
96 207.07 radiation 10.0 270 < th dose independent sin 11 NA
100 207.18 temperature 25.0 270 > th dose independent rect. 24 15
102 207.32 radiation 10.0 90 < th dose independent rect. 23 10
115 207.78 temperature 15.0 90 > th dose independent rect. 6 17
121 208.12 temperature 30.0 270 < th dose dependent rect. 6 2
148 208.67 temperature 30.0 270 < th dose dependent rect. 4 5
154 208.74 temperature 30.0 90 < th dose independent rect. 6 17
158 208.81 radiation 10.0 90 < th dose dependent rect. 23 14
165 208.94 wind 9.0 90 < th dose independent rect. 6 17
175 209.10 precipitation 0.1 90 < th dose independent rect. 6 17
176 209.10 precipitation 0.1 90 < th dose dependent rect. 6 17
182 209.13 atmosphere 1000.0 90 > th dose independent rect. 6 17
184 209.15 wind 9.0 90 < th dose independent rect. 23 7
185 209.15 temperature 10.0 90 > th dose independent rect. 23 7
186 209.15 temperature 30.0 90 < th dose independent rect. 23 7
187 209.15 humidity 50.0 90 > th dose independent rect. 23 7
190 209.15 atmosphere 995.0 90 > th dose independent rect. 23 7
198 209.19 radiation 20.0 90 < th dose dependent rect. 23 8
199 209.25 precipitation 0.1 90 < th dose independent rect. 23 7
201 209.25 precipitation 0.1 90 < th dose dependent rect. 23 7
216 209.50 radiation 40.0 30 < th dose dependent rect. 10 21
221 209.57 radiation 40.0 90 < th dose dependent rect. 23 7
225 209.64 atmosphere 1015.0 270 < th dose dependent rect. 7 1
228 209.65 atmosphere 1015.0 270 < th dose dependent rect. 6 3
229 209.69 atmosphere 1015.0 90 < th dose independent rect. 6 17
237 209.81 humidity 50.0 90 > th dose dependent rect. 23 7
247 210.00 humidity 50.0 90 > th dose independent rect. 6 17
249 210.03 atmosphere 1015.0 10 < th dose dependent rect. 7 5
254 210.10 atmosphere 1015.0 90 < th dose dependent rect. 6 7
279 210.33 radiation 40.0 4320 < th dose independent rect. 16 15
284 210.37 wind 1.0 270 > th dose independent rect. 7 1
295 210.54 temperature 20.0 720 > th dose dependent rect. 24 6
297 210.56 temperature 20.0 720 > th dose dependent rect. 24 8
301 210.61 wind 1.0 90 > th dose independent rect. 23 7
321 210.82 temperature 30.0 10 < th dose dependent rect. 7 3
322 210.84 humidity 80.0 270 > th dose independent rect. 6 3
349 211.14 humidity 80.0 270 > th dose independent rect. 7 1
353 211.17 humidity 80.0 270 > th dose independent rect. 5 5
384 211.45 atmosphere 1015.0 90 < th dose independent rect. 23 7
387 211.48 radiation 10.0 720 < th dose independent rect. 23 7
400 211.58 atmosphere 1005.0 90 < th dose dependent rect. 6 8
406 211.62 wind 1.0 90 > th dose independent rect. 6 5
407 211.62 atmosphere 995.0 270 > th dose dependent rect. 9 9
408 211.64 atmosphere 1005.0 270 < th dose independent rect. 7 4
411 211.69 radiation 10.0 90 < th dose independent rect. 1 14
413 211.73 atmosphere 1015.0 90 < th dose dependent rect. 6 17
459 212.06 temperature 20.0 10 > th dose independent rect. 7 3
477 212.16 temperature 25.0 10 < th dose independent rect. 7 1
486 212.20 atmosphere 1010.0 270 < th dose independent rect. 7 1
495 212.28 wind 9.0 90 < th dose dependent rect. 23 7
501 212.32 wind 9.0 10 < th dose independent rect. 7 16
507 212.34 temperature 15.0 90 > th dose independent rect. 6 6
514 212.37 radiation 40.0 10 < th dose independent rect. 10 10
518 212.40 atmosphere 1015.0 90 < th dose dependent rect. 23 7
521 212.44 radiation 30.0 10 < th dose independent rect. 1 15
542 212.55 temperature 15.0 270 > th dose independent rect. 4 6
586 212.85 atmosphere 1005.0 270 < th dose dependent rect. 9 1
594 212.90 radiation 30.0 10 < th dose dependent rect. 23 15
660 213.14 temperature 30.0 90 < th dose independent rect. 6 19
665 213.16 humidity 60.0 270 > th dose independent rect. 4 6
685 213.20 radiation 30.0 10 < th dose dependent rect. 23 13
697 213.27 wind 7.0 270 < th dose independent rect. 4 6
703 213.30 precipitation 0.1 10 < th dose independent rect. 7 16
706 213.30 precipitation 0.1 10 < th dose dependent rect. 7 16
708 213.31 wind 9.0 10 < th dose independent rect. 23 8
709 213.31 temperature 10.0 10 > th dose independent rect. 23 8
710 213.31 temperature 30.0 10 < th dose independent rect. 23 8
711 213.31 humidity 50.0 10 > th dose independent rect. 23 8
714 213.31 atmosphere 995.0 10 > th dose independent rect. 23 8
718 213.31 temperature 10.0 10 > th dose independent rect. 7 16
720 213.31 atmosphere 1015.0 10 < th dose independent rect. 7 16
726 213.32 temperature 30.0 90 < th dose dependent rect. 23 7
745 213.35 wind 1.0 14400 < th dose independent rect. 20 7
754 213.37 temperature 10.0 1440 > th dose independent rect. 24 8
757 213.37 temperature 30.0 1440 < th dose independent rect. 24 8
761 213.37 humidity 50.0 1440 > th dose independent rect. 24 8
766 213.37 atmosphere 995.0 1440 > th dose independent rect. 24 8
767 213.37 temperature 10.0 1440 > th dose independent rect. 8 16
790 213.45 atmosphere 995.0 10 > th dose independent rect. 7 16
809 213.52 precipitation 0.1 270 < th dose independent rect. 7 1
810 213.52 temperature 20.0 10 > th dose independent rect. 7 5
815 213.52 precipitation 0.1 270 < th dose dependent rect. 7 1
818 213.53 wind 7.0 270 < th dose independent rect. 7 1
821 213.53 radiation 1.0 720 < th dose dependent rect. 5 2
834 213.56 radiation 10.0 270 < th dose dependent rect. 21 9
836 213.57 wind 7.0 10 < th dose independent rect. 7 5
846 213.62 atmosphere 1000.0 270 > th dose independent rect. 6 2
857 213.64 atmosphere 1000.0 90 > th dose independent rect. 11 19
860 213.65 radiation 10.0 10 > th dose independent sin 8 NA
863 213.65 temperature 10.0 270 > th dose independent rect. 7 1
866 213.65 humidity 50.0 270 > th dose independent rect. 7 1
870 213.65 wind 1.0 270 > th dose independent rect. 4 6
872 213.65 temperature 10.0 270 > th dose independent rect. 8 23
883 213.68 precipitation 0.1 270 < th dose independent rect. 4 6
886 213.68 precipitation 0.1 270 < th dose dependent rect. 4 6
889 213.69 atmosphere 1010.0 10 < th dose independent rect. 24 7
894 213.71 wind 1.0 90 > th dose independent rect. 6 19
896 213.71 atmosphere 1015.0 10 < th dose dependent rect. 24 7
908 213.72 atmosphere 995.0 270 > th dose independent rect. 8 22
912 213.74 atmosphere 1000.0 270 > th dose independent rect. 4 6
937 213.81 radiation 1.0 720 > th dose independent rect. 4 1
951 213.81 radiation 1.0 720 > th dose dependent rect. 4 1
965 213.83 humidity 50.0 90 > th dose independent rect. 6 5
991 213.90 precipitation 0.1 90 < th dose independent rect. 6 5
993 213.90 precipitation 0.1 90 < th dose dependent rect. 6 5
1000 213.92 atmosphere 995.0 90 > th dose independent rect. 6 5