BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0445600 Os09g0445600|AK107839
         (139 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19875.1  | chr5:6718412-6718783 FORWARD LENGTH=124             59   6e-10
AT2G31940.1  | chr2:13580600-13580962 FORWARD LENGTH=121           54   4e-08

>AT5G19875.1 | chr5:6718412-6718783 FORWARD LENGTH=124
          Length = 123

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 40  FSWYTSYGSAAERFADQXXXXXXXXXXXXXXXXXXXSGGGDGERRGVDQLRQLSLPMPER 99
           F+WY ++ S  E   D                    SGG               +P PE+
Sbjct: 35  FTWYLNFESIIEDTLDHLKLVFIFTPLFLLLLVHFFSGG-----------LSFYVPWPEQ 83

Query: 100 DSIHRAGGSPWXXXXXXXXXXXMVSYQSNFRDRWFPL 136
           DSIHRAG SPW           MVSYQS+F++RWFP 
Sbjct: 84  DSIHRAGSSPWGVAAVLVLILFMVSYQSDFQERWFPF 120



>AT2G31940.1 | chr2:13580600-13580962 FORWARD LENGTH=121
          Length = 120

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 41  SWYTSYGSAAERFADQXXXXXXXXXXXXXXXXXXXSGGGDGERRGVDQLRQLSLPMPERD 100
           SWY SY    E F  Q                   S     + +GV  +    + + ER+
Sbjct: 29  SWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFLS-----DDQGVGGMMTSLIHLNERE 83

Query: 101 SIHRAGGSPWXXXXXXXXXXXMVSYQSNFRDRWFPL 136
           S++RAGG+PW           MVSYQS F++RWFPL
Sbjct: 84  SLYRAGGTPWGVAFMLVFLFFMVSYQSQFQERWFPL 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,238,129
Number of extensions: 59972
Number of successful extensions: 60
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)