FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0444200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lecithin:cholesterol acyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0143) R2 : 0.209
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.331 (0.0302) R2dN8 : 0.27 R2N8 : 0.209
σ : 0.27
deviance : 33.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.33 0.196 11.4 -0.124 0.0612 0.335 -1.08 -3.15 0.25 11.4 25.6 4263 -- --
19.65 0.206 11.3 0.528 0.0611 0.113 -1.06 -- 0.349 11.3 17.51 18758 -- --
21.61 0.216 11.4 -0.329 0.0693 0.365 -- -3.33 0.211 8.87 27.04 5679 -- --
24.23 0.229 11.3 0.431 0.0788 0.183 -- -- 0.323 9.59 15.41 16593 -- --
21.78 0.217 11.4 -0.321 -- 0.362 -- -3.34 0.212 -- 27.04 5698 -- --
19.98 0.21 11.3 0.611 0.0555 -- -1.05 -- 0.399 11.3 -- -- -- --
24.65 0.233 11.3 0.567 0.0688 -- -- -- 0.394 9.55 -- -- -- --
24.52 0.231 11.3 0.445 -- 0.161 -- -- 0.328 -- 15 17283 -- --
26.02 0.238 11.3 -- 0.0773 0.429 -- -- 0.201 10.4 10.98 46955 -- --
24.93 0.233 11.3 0.567 -- -- -- -- 0.394 -- -- -- -- --
33.13 0.269 11.3 -- 0.0689 -- -- -- 0.331 8.92 -- -- -- --
26.34 0.239 11.3 -- -- 0.427 -- -- 0.203 -- 6.409 47520 -- --
33.4 0.27 11.3 -- -- -- -- -- 0.331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.54 humidity 60 43200 < th dose dependent rect. 18 13
2 16.57 humidity 50 43200 > th dose independent rect. 17 15
3 16.57 radiation 10 43200 < th dose dependent rect. 15 18
5 16.57 radiation 10 43200 < th dose dependent rect. 16 20
19 16.62 humidity 50 43200 < th dose dependent rect. 17 15
24 16.64 radiation 30 43200 > th dose independent rect. 7 1
40 16.64 radiation 10 43200 < th dose dependent sin 12 NA
47 16.66 humidity 50 43200 < th dose independent rect. 17 15
55 16.67 radiation 10 43200 < th dose dependent rect. 11 22
68 16.70 radiation 10 43200 < th dose dependent rect. 6 4
76 16.71 radiation 10 43200 > th dose independent rect. 17 14
83 16.72 radiation 10 43200 < th dose dependent rect. 7 1
85 16.72 radiation 10 43200 < th dose dependent rect. 4 8
96 16.73 radiation 10 43200 > th dose independent rect. 16 16
98 16.73 radiation 10 43200 < th dose dependent no NA NA
99 16.73 wind 1 43200 < th dose dependent rect. 22 3
102 16.73 radiation 10 43200 < th dose dependent rect. 4 15
185 16.75 radiation 10 43200 < th dose independent rect. 15 2
195 16.76 radiation 10 14400 < th dose independent rect. 6 1
198 16.76 wind 1 43200 < th dose dependent rect. 20 5
222 16.77 radiation 10 43200 < th dose independent rect. 13 12
239 16.78 radiation 10 43200 < th dose independent rect. 11 18
251 16.79 radiation 10 43200 < th dose independent rect. 11 8
280 16.80 radiation 10 43200 < th dose independent sin 17 NA
320 16.81 wind 1 43200 < th dose dependent rect. 20 3
342 16.83 humidity 50 43200 > th dose independent sin 11 NA
411 16.86 humidity 50 43200 > th dose independent rect. 17 8
480 16.88 radiation 1 43200 > th dose dependent sin 13 NA
483 16.88 radiation 1 43200 > th dose dependent rect. 17 1
487 16.88 radiation 1 43200 > th dose dependent rect. 16 16
490 16.88 radiation 1 43200 > th dose dependent rect. 14 18
499 16.89 radiation 10 14400 < th dose independent rect. 17 14
503 16.89 humidity 50 43200 > th dose independent rect. 15 18
534 16.90 radiation 30 43200 > th dose independent sin 12 NA
535 16.90 radiation 10 43200 > th dose independent rect. 7 1
536 16.90 radiation 10 14400 < th dose independent rect. 23 8
543 16.90 humidity 50 43200 < th dose dependent rect. 17 5
560 16.91 humidity 50 43200 < th dose independent sin 11 NA
687 16.93 radiation 10 43200 < th dose independent rect. 24 17
709 16.93 radiation 1 43200 > th dose dependent rect. 13 5
714 16.93 wind 1 43200 < th dose dependent rect. 17 9
733 16.94 atmosphere 1010 14400 < th dose independent rect. 5 2
746 16.94 radiation 10 43200 < th dose independent rect. 13 23
750 16.94 radiation 40 43200 > th dose dependent rect. 13 2
756 16.94 radiation 40 43200 < th dose dependent rect. 13 6
762 16.94 radiation 40 43200 < th dose dependent rect. 13 10
846 16.95 radiation 10 43200 < th dose independent no NA NA
848 16.95 radiation 20 14400 < th dose independent rect. 8 1
849 16.95 radiation 40 43200 > th dose independent rect. 13 3
940 16.95 radiation 10 43200 > th dose dependent rect. 14 1
943 16.95 radiation 20 43200 < th dose dependent rect. 14 4
944 16.95 radiation 40 43200 < th dose dependent rect. 14 4
984 16.96 atmosphere 1010 14400 > th dose independent rect. 5 2