BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0444200 Os09g0444200|AK100079
(691 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13640.1 | chr5:4393529-4397213 FORWARD LENGTH=672 1009 0.0
AT3G44830.1 | chr3:16368890-16372356 FORWARD LENGTH=666 817 0.0
AT1G04010.1 | chr1:1031703-1036128 REVERSE LENGTH=634 80 4e-15
>AT5G13640.1 | chr5:4393529-4397213 FORWARD LENGTH=672
Length = 671
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/629 (76%), Positives = 537/629 (85%), Gaps = 4/629 (0%)
Query: 63 RWSCVDSCCWLVGCVCSAWWLLLFLYNAMPASFPQYVTEAITGPLPDPPGVKLQKEGLRA 122
+WSC+DSCCW +GCVC WW LLFLYNAMPASFPQYVTE ITGPLPDPPGVKL+KEGL+A
Sbjct: 47 KWSCIDSCCWFIGCVCVTWWFLLFLYNAMPASFPQYVTERITGPLPDPPGVKLKKEGLKA 106
Query: 123 KHPVVFVPGIVTGGLELWEGHQCAEGLFRKRLWGGTFGDVYKRPLCWVEHMSLDNETGLD 182
KHPVVF+PGIVTGGLELWEG QCA+GLFRKRLWGGTFG+VYKRPLCWVEHMSLDNETGLD
Sbjct: 107 KHPVVFIPGIVTGGLELWEGKQCADGLFRKRLWGGTFGEVYKRPLCWVEHMSLDNETGLD 166
Query: 183 KPGIRVRPVTGLVAADYFVPGYFVWAVLIANLARIGYEEKTMYMAAYDWRLSFQNTEVRD 242
GIRVR V+GLVAADYF PGYFVWAVLIANLA IGYEEK MYMAAYDWRLSFQNTEVRD
Sbjct: 167 PAGIRVRAVSGLVAADYFAPGYFVWAVLIANLAHIGYEEKNMYMAAYDWRLSFQNTEVRD 226
Query: 243 QTLSRIKSNIELLVATNGGNRVVVIPHSMGVLYFLHFMKWVEAXXXXXXXXXXNWCAKHI 302
QTLSR+KSNIEL+V+TNGG + V++PHSMGVLYFLHFMKWVEA +WCAK+I
Sbjct: 227 QTLSRMKSNIELMVSTNGGKKAVIVPHSMGVLYFLHFMKWVEAPAPLGGGGGPDWCAKYI 286
Query: 303 KSVMNIGGPFLGVPKAVAGLFSSEAKDVAVARAIAPEVLDSDFLGLQTLRHLMRMTRTWD 362
K+VMNIGGPFLGVPKAVAGLFS+EAKDVAVARAIAP LD+D LQTL+H+MRMTRTWD
Sbjct: 287 KAVMNIGGPFLGVPKAVAGLFSAEAKDVAVARAIAPGFLDTDIFRLQTLQHVMRMTRTWD 346
Query: 363 STMSMIPKGGDTIWGDLDWSPEDGFECKAKNQKINDSEVSKDANGKNEVHPEPVKYGRIV 422
STMSM+PKGGDTIWG LDWSPE G C K QK N++ NG ++ PV YGR++
Sbjct: 347 STMSMLPKGGDTIWGGLDWSPEKGHTCCGKKQKNNETCGEAGENGVSK--KSPVNYGRMI 404
Query: 423 SFGKDVAEAPSSEIEQIEFRDAVKGNNIAHSNTSCRDIWTEYHELGWGGIKAVADYKVYT 482
SFGK+VAEA SEI I+FR AVKG +I N +CRD+WTEYH++G GIKA+A+YKVYT
Sbjct: 405 SFGKEVAEAAPSEINNIDFRGAVKGQSI--PNHTCRDVWTEYHDMGIAGIKAIAEYKVYT 462
Query: 483 AGSIIDLLRFVAPRMMQRGSVHFSYGIADNLDDPKYGHYKYWSNPLETKLPNAPEMEIFS 542
AG IDLL +VAP+MM RG+ HFSYGIAD+LDD KY KYWSNPLETKLPNAPEMEI+S
Sbjct: 463 AGEAIDLLHYVAPKMMARGAAHFSYGIADDLDDTKYQDPKYWSNPLETKLPNAPEMEIYS 522
Query: 543 MYGVGIPTERAYVYKLAPQAECYIPFQIDASAEGGDENSCLKGGVYLSNGDETVPVLSAG 602
+YGVGIPTERAYVYKL + IPFQI SA DE+SCLK GVY +GDETVPVLSAG
Sbjct: 523 LYGVGIPTERAYVYKLNQSPDSCIPFQIFTSAHEEDEDSCLKAGVYNVDGDETVPVLSAG 582
Query: 603 YMCAKGWRGKTRFNPSGSKTYVREYSHSPPSNLLEGRGTQSGAHVDIMGNFALIEDIIRI 662
YMCAK WRGKTRFNPSG KTY+REY+HSPP+NLLEGRGTQSGAHVDIMGNFALIEDI+R+
Sbjct: 583 YMCAKAWRGKTRFNPSGIKTYIREYNHSPPANLLEGRGTQSGAHVDIMGNFALIEDIMRV 642
Query: 663 AAGATGEELGGDQVYSDIFKWSDKIKLKL 691
AAG G ++G DQV+S IF+WS++I LKL
Sbjct: 643 AAGGNGSDIGHDQVHSGIFEWSERIDLKL 671
>AT3G44830.1 | chr3:16368890-16372356 FORWARD LENGTH=666
Length = 665
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/643 (59%), Positives = 491/643 (76%), Gaps = 19/643 (2%)
Query: 58 KRTRARWSCVDSCCWLVGCVCSAWWLLLFLYNAMPASFPQYVTEAITGPLPDPPGVKLQK 117
+R R SCVDSCCWL+G +C+AWWLLLFLY+++P P + P+ PG +L +
Sbjct: 33 RRRSGRCSCVDSCCWLIGYLCTAWWLLLFLYHSVPV--PAMLQA------PESPGTRLSR 84
Query: 118 EGLRAKHPVVFVPGIVTGGLELWEGHQCAEGLFRKRLWGGTFGDVYKRPLCWVEHMSLDN 177
+G++A HPV+ VPGIVTGGLELWEG CAEGLFRKRLWG +F ++ +RPLCW+EH+SLD+
Sbjct: 85 DGVKAFHPVILVPGIVTGGLELWEGRPCAEGLFRKRLWGASFSEILRRPLCWLEHLSLDS 144
Query: 178 ETGLDKPGIRVRPVTGLVAADYFVPGYFVWAVLIANLARIGYEEKTMYMAAYDWRLSFQN 237
ETGLD GIRVR V GLVAADYF P YF WAVLI NLA+IGYE K ++MA+YDWRLSF N
Sbjct: 145 ETGLDPSGIRVRAVPGLVAADYFAPCYFAWAVLIENLAKIGYEGKNLHMASYDWRLSFHN 204
Query: 238 TEVRDQTLSRIKSNIELLVATNGGNRVVVIPHSMGVLYFLHFMKWVEA-XXXXXXXXXXN 296
TEVRDQ+LSR+KS IEL+ ATNG +VVV+PHSMG +YFLHF+KWVE
Sbjct: 205 TEVRDQSLSRLKSKIELMYATNGFKKVVVVPHSMGAIYFLHFLKWVETPLPDGGGGGGPG 264
Query: 297 WCAKHIKSVMNIGGPFLGVPKAVAGLFSSEAKDVAVARAIAPEVLDSDFLGLQTLRHLMR 356
WCAKHIKSV+NIG FLGVPKAV+ L S+E KD+A AR++AP +LDS+ L LQTL HLMR
Sbjct: 265 WCAKHIKSVVNIGPAFLGVPKAVSNLLSAEGKDIAYARSLAPGLLDSELLKLQTLEHLMR 324
Query: 357 MTRTWDSTMSMIPKGGDTIWGDLDWSPEDGFEC---KAKNQKINDSEVSKDANGKNEVH- 412
M+ +WDS +S++PKGG+ IWGDLD E+G C K K+ +++ S + K V
Sbjct: 325 MSHSWDSIVSLLPKGGEAIWGDLDSHAEEGLNCIYSKRKSSQLSLSNLHKQNYSLKPVSR 384
Query: 413 -PEPVKYGRIVSFGKDVAEAPSSEIEQIEFRDAVKGNNIAHSNTSCRDIWTEYHELGWGG 471
EP KYGRIVSFGK +E PSS++ + ++ + + ++ +TSC + W+EY+E+
Sbjct: 385 VKEPAKYGRIVSFGKRASELPSSQLSTLNVKELSRVDGNSNDSTSCGEFWSEYNEMSRES 444
Query: 472 IKAVADYKVYTAGSIIDLLRFVAPRMMQRGSVHFSYGIADNLDDPKYGHYKYWSNPLETK 531
I VA+ YTA +++DLLRF+AP+MM+R HFS+GIAD+LDDPKYGHYKYWSNPLETK
Sbjct: 445 IVKVAENTAYTATTVLDLLRFIAPKMMRRAEAHFSHGIADDLDDPKYGHYKYWSNPLETK 504
Query: 532 LPNAPEMEIFSMYGVGIPTERAYVYKLAP---QAECYIPFQIDASAEGGDENSCLKGGVY 588
LP APEME++ +YGVGIPTER+Y+YKLA + + IPF+ID S +G D CLKGG
Sbjct: 505 LPEAPEMEMYCLYGVGIPTERSYIYKLATSSGKCKSSIPFRIDGSLDGDD--VCLKGGTR 562
Query: 589 LSNGDETVPVLSAGYMCAKGWRGKTRFNPSGSKTYVREYSHSPPSNLLEGRGTQSGAHVD 648
++GDE+VPV+SAG+MCAKGWRGKTRFNPSG T++REY H PP +LLE RGT+SGAHVD
Sbjct: 563 FADGDESVPVISAGFMCAKGWRGKTRFNPSGMDTFLREYKHKPPGSLLESRGTESGAHVD 622
Query: 649 IMGNFALIEDIIRIAAGATGEELGGDQVYSDIFKWSDKIKLKL 691
IMGN LIED++RIAAGA+G+E+GGD++YSD+ + S++I +KL
Sbjct: 623 IMGNVGLIEDVLRIAAGASGQEIGGDRIYSDVMRMSERISIKL 665
>AT1G04010.1 | chr1:1031703-1036128 REVERSE LENGTH=634
Length = 633
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 83/215 (38%), Gaps = 21/215 (9%)
Query: 168 CWVEHMSLDNETGLDKPGIRVRPVTGLVAADYFVPGYF------VWAVLIANLARIGYEE 221
CW + M LD D P + RP +GL A PGY VW + G E
Sbjct: 88 CWFKCMVLDPYNQTDHPECKSRPDSGLSAITELDPGYITGPLSTVWKEWLKWCVEFGIEA 147
Query: 222 KTMYMAAYDWRLSFQNTEVRDQTLSRIKSNIELLVATNGGNRVVVIPHSMGVLYFLHFMK 281
+ YDWRLS E RD ++K E + GG +V HSMG F +F++
Sbjct: 148 NAIVAVPYDWRLSPTKLEERDLYFHKLKLTFETALKLRGGPS-IVFAHSMGNNVFRYFLE 206
Query: 282 WVEAXXXXXXXXXXNWCAKHIKSVMNIGGPFLGVPKAVAGLFSSEAKDVAVARAIAPEVL 341
W+ W +HI + +G P LG +A+ S + V+ A +L
Sbjct: 207 WLR--LEIAPKHYLKWLDQHIHAYFAVGAPLLGSVEAIKSTLSGVTFGLPVSEGTA-RLL 263
Query: 342 DSDFLGLQTLRHLMRMTRTWDSTMSMIPKGGDTIW 376
+ F + W S KG +T W
Sbjct: 264 SNSF-----------ASSLWLMPFSKNCKGDNTFW 287
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,513,027
Number of extensions: 685550
Number of successful extensions: 1504
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1496
Number of HSP's successfully gapped: 3
Length of query: 691
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 586
Effective length of database: 8,227,889
Effective search space: 4821542954
Effective search space used: 4821542954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)