Os09g0440700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ctr copper transporter family protein.
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Os09g0440700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ctr copper transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.86 | 0.209 | 12.2 | -0.802 | 0.311 | -2.71 | 0.365 | 14 | -0.162 | 13.4 | 1000 | 272 | -- | -- |
| 22.28 | 0.222 | 12 | 0.0736 | 0.293 | -0.225 | 0.313 | -- | -0.161 | 13.4 | 1000 | 272 | -- | -- |
| 20.37 | 0.21 | 12.2 | -0.783 | 0.312 | -2.64 | -- | 13.6 | -0.159 | 13.2 | 1000 | 269 | -- | -- |
| 22.32 | 0.221 | 12 | 0.101 | 0.3 | -0.431 | -- | -- | -0.165 | 13.3 | 996.5 | 156 | -- | -- |
| 26.31 | 0.239 | 12.2 | -0.77 | -- | -2.58 | -- | 13.2 | -0.162 | -- | 1000 | 265 | -- | -- |
| 23.67 | 0.228 | 12 | 0.113 | 0.299 | -- | 0.33 | -- | -0.176 | 13.4 | -- | -- | -- | -- |
| 24.11 | 0.23 | 12 | 0.124 | 0.298 | -- | -- | -- | -0.175 | 13.3 | -- | -- | -- | -- |
| 27.65 | 0.245 | 12 | 0.0981 | -- | -0.38 | -- | -- | -0.148 | -- | 998 | 120 | -- | -- |
| 22.5 | 0.221 | 12 | -- | 0.299 | -0.433 | -- | -- | -0.174 | 13.2 | 997.1 | 145 | -- | -- |
| 29.61 | 0.254 | 12 | 0.113 | -- | -- | -- | -- | -0.181 | -- | -- | -- | -- | -- |
| 24.52 | 0.232 | 12 | -- | 0.296 | -- | -- | -- | -0.188 | 13.3 | -- | -- | -- | -- |
| 27.77 | 0.245 | 12 | -- | -- | -0.381 | -- | -- | -0.176 | -- | 997.9 | 120 | -- | -- |
| 29.94 | 0.255 | 12 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 4 | 19.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 7 | 19.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 7 |
| 9 | 19.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 18 | 19.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 45 | 19.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 60 | 19.80 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 1 | 22 |
| 83 | 19.89 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 9 | 23 |
| 85 | 19.90 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 98 | 19.94 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 101 | 19.94 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 18 | 23 |
| 150 | 20.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 153 | 20.06 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 23 |
| 159 | 20.10 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 170 | 20.14 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 171 | 20.14 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 177 | 20.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 201 | 20.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 206 | 20.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 212 | 20.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 255 | 20.28 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 273 | 20.31 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 2 | 22 |
| 284 | 20.31 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 19 | 23 |
| 290 | 20.32 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 323 | 20.34 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 333 | 20.35 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 343 | 20.37 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 345 | 20.37 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 347 | 20.37 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 355 | 20.38 | atmosphere | 1000 | 270 | > th | dose independent | sin | 1 | NA |
| 369 | 20.39 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 372 | 20.39 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 384 | 20.40 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 393 | 20.40 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 395 | 20.41 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 444 | 20.43 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 18 |
| 489 | 20.46 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 493 | 20.46 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 526 | 20.48 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 541 | 20.49 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 553 | 20.49 | atmosphere | 1000 | 270 | < th | dose dependent | no | NA | NA |
| 555 | 20.49 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 557 | 20.50 | atmosphere | 1000 | 270 | < th | dose independent | sin | 1 | NA |
| 558 | 20.50 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 578 | 20.50 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 600 | 20.51 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 602 | 20.52 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 607 | 20.52 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 625 | 20.52 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 678 | 20.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 684 | 20.55 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 703 | 20.55 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 726 | 20.57 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 740 | 20.58 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 741 | 20.58 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 756 | 20.58 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 765 | 20.59 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 800 | 20.59 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 806 | 20.60 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 817 | 20.60 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 861 | 20.61 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 869 | 20.61 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 878 | 20.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 887 | 20.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 9 |
| 923 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | no | NA | NA |
| 936 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 938 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 939 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 940 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 941 | 20.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 943 | 20.63 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 988 | 20.63 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 11 | 23 |