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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0439800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0279) R2 : 0.546
β1 : -1.25 (0.102) R2dD : 0.156 R2D : 0.184
β2 : 1.04 (0.0663) R2dC : 0.246 R2C : 0.257
β3 : -- (--) R2dE : -- R2E : --
β4 : -2.69 (0.255) R2dD*C : 0.112 R2D*C : 0.138
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0379 (0.0595) R2dN8 : 0.000542 R2N8 : -0.00278
σ : 0.524
deviance : 125
__
_____
C
peak time of C : 12.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.17 0.495 3.42 -1.21 0.868 -0.451 -1.87 2.53 -0.0512 12.9 39.95 152 -- --
117.72 0.505 3.42 -1.24 0.832 -0.549 -2.76 -- -0.054 12.8 34.6 122 -- --
122.68 0.516 3.42 -1.26 0.854 -0.441 -- 4.02 -0.0557 12.8 39.68 156 -- --
145.49 0.562 3.45 -1.33 0.836 -0.731 -- -- -0.103 12.9 39.99 132 -- --
156.93 0.583 3.45 -1.21 -- -1.15 -- 3.51 -0.0771 -- 40 155 -- --
125 0.524 3.42 -1.25 1.04 -- -2.69 -- -0.0379 12.9 -- -- -- --
155.49 0.584 3.43 -1.35 1.05 -- -- -- -0.0525 12.8 -- -- -- --
175.43 0.617 3.46 -1.27 -- -1.49 -- -- -0.123 -- 39.93 137 -- --
150.43 0.571 3.33 -- 1.03 -1.16 -- -- 0.38 12.9 59.97 47520 -- --
223.67 0.699 3.45 -1.39 -- -- -- -- -0.0719 -- -- -- -- --
203.59 0.667 3.4 -- 1.07 -- -- -- 0.098 12.9 -- -- -- --
216.52 0.685 3.35 -- -- -1.21 -- -- 0.379 -- 60 47520 -- --
274.58 0.773 3.41 -- -- -- -- -- 0.0823 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.53 radiation 1.0 270 > th dose independent rect. 7 8
2 100.28 temperature 15.0 270 > th dose independent rect. 7 8
5 100.90 temperature 15.0 90 > th dose independent rect. 9 7
7 101.46 humidity 90.0 90 < th dose independent rect. 9 7
9 101.96 temperature 30.0 30 < th dose independent rect. 9 7
17 102.89 radiation 40.0 90 < th dose independent rect. 5 16
21 103.04 radiation 40.0 270 < th dose independent rect. 3 16
23 103.29 humidity 50.0 90 > th dose dependent rect. 5 15
26 103.51 atmosphere 1000.0 90 > th dose independent rect. 9 7
31 103.76 wind 9.0 90 < th dose independent rect. 9 7
32 103.76 humidity 90.0 10 < th dose independent rect. 9 7
37 103.89 wind 9.0 270 < th dose independent rect. 19 8
38 103.91 precipitation 0.1 270 < th dose independent rect. 19 8
39 103.91 precipitation 0.1 270 < th dose dependent rect. 19 8
40 103.95 temperature 10.0 270 > th dose independent rect. 19 8
41 103.95 temperature 30.0 270 < th dose independent rect. 19 8
42 103.95 humidity 50.0 270 > th dose independent rect. 19 8
43 103.95 atmosphere 1000.0 270 > th dose independent rect. 7 8
44 103.95 atmosphere 995.0 270 > th dose independent rect. 19 8
45 103.95 radiation 1.0 270 < th dose independent rect. 19 8
50 103.95 temperature 10.0 270 > th dose independent rect. 3 16
51 103.95 atmosphere 1015.0 270 < th dose independent rect. 3 16
52 103.95 radiation 1.0 270 < th dose dependent rect. 19 8
59 104.00 precipitation 0.1 270 < th dose independent rect. 7 8
60 104.00 precipitation 0.1 270 < th dose dependent rect. 7 8
62 104.09 radiation 40.0 270 < th dose independent rect. 15 16
63 104.12 wind 9.0 270 < th dose independent rect. 7 8
64 104.15 precipitation 0.1 270 < th dose independent rect. 3 16
65 104.15 precipitation 0.1 270 < th dose dependent rect. 3 16
67 104.27 precipitation 0.1 270 < th dose independent rect. 15 16
68 104.27 precipitation 0.1 270 < th dose dependent rect. 15 16
74 104.36 atmosphere 1015.0 270 < th dose independent rect. 7 8
75 104.36 temperature 10.0 270 > th dose independent rect. 15 16
77 104.40 wind 9.0 90 < th dose independent rect. 16 17
83 104.46 precipitation 0.1 90 < th dose independent rect. 9 7
85 104.46 precipitation 0.1 90 < th dose dependent rect. 9 7
86 104.46 radiation 10.0 270 < th dose dependent rect. 3 16
87 104.49 temperature 30.0 270 < th dose independent rect. 21 17
88 104.49 humidity 50.0 270 > th dose dependent rect. 3 16
89 104.49 radiation 40.0 90 < th dose dependent rect. 5 16
90 104.50 humidity 50.0 270 > th dose dependent rect. 2 8
91 104.50 humidity 80.0 270 > th dose dependent rect. 3 14
93 104.56 humidity 50.0 270 > th dose independent rect. 7 8
95 104.57 atmosphere 1015.0 90 < th dose independent rect. 9 7
102 104.63 humidity 50.0 90 > th dose independent rect. 16 17
107 104.71 radiation 40.0 270 < th dose dependent rect. 3 16
108 104.72 atmosphere 995.0 90 > th dose independent rect. 16 17
117 104.83 atmosphere 995.0 270 > th dose independent rect. 3 16
118 104.89 radiation 40.0 90 < th dose independent rect. 16 19
121 104.91 wind 9.0 270 < th dose independent rect. 3 16
137 105.03 radiation 40.0 270 < th dose independent rect. 2 7
138 105.03 wind 1.0 270 > th dose independent rect. 7 8
144 105.09 wind 1.0 90 > th dose independent rect. 9 7
154 105.20 humidity 90.0 90 < th dose dependent rect. 8 8
189 105.37 humidity 50.0 10 > th dose independent rect. 5 15
220 105.47 humidity 50.0 270 > th dose independent rect. 3 16
229 105.56 radiation 40.0 270 < th dose independent rect. 14 19
236 105.59 temperature 30.0 30 < th dose independent rect. 22 18
251 105.78 temperature 10.0 1440 > th dose independent rect. 10 7
254 105.78 temperature 10.0 1440 > th dose independent rect. 17 17
258 105.79 wind 9.0 270 < th dose dependent rect. 19 8
274 105.90 wind 9.0 270 < th dose independent rect. 21 17
284 105.93 radiation 40.0 10 < th dose dependent rect. 5 17
292 105.95 humidity 80.0 270 > th dose dependent rect. 3 7
299 105.98 precipitation 0.1 270 < th dose independent rect. 21 17
304 105.98 precipitation 0.1 270 < th dose dependent rect. 21 17
324 106.04 humidity 90.0 270 < th dose independent rect. 23 15
348 106.14 humidity 60.0 270 > th dose independent rect. 2 7
370 106.18 radiation 40.0 270 < th dose dependent rect. 3 6
372 106.19 precipitation 0.1 270 < th dose independent rect. 14 7
374 106.19 precipitation 0.1 270 < th dose dependent rect. 14 7
376 106.20 temperature 10.0 270 > th dose independent rect. 14 7
377 106.20 temperature 10.0 270 > th dose independent rect. 21 17
378 106.20 atmosphere 995.0 270 > th dose independent rect. 21 17
383 106.22 humidity 50.0 270 > th dose dependent rect. 19 8
385 106.23 wind 9.0 270 < th dose independent rect. 9 17
387 106.23 precipitation 0.1 270 < th dose independent rect. 9 17
390 106.23 precipitation 0.1 270 < th dose dependent rect. 9 17
394 106.26 wind 1.0 270 > th dose independent rect. 14 7
395 106.26 temperature 30.0 90 < th dose independent rect. 16 17
418 106.40 wind 9.0 270 < th dose independent rect. 2 7
419 106.40 temperature 10.0 270 > th dose independent rect. 2 7
422 106.40 atmosphere 995.0 270 > th dose independent rect. 2 7
423 106.40 atmosphere 1015.0 270 < th dose independent rect. 2 7
424 106.40 temperature 10.0 270 > th dose independent rect. 9 17
425 106.40 humidity 50.0 270 > th dose independent rect. 21 17
427 106.41 precipitation 0.1 270 < th dose independent rect. 2 7
428 106.41 precipitation 0.1 270 < th dose dependent rect. 2 7
449 106.46 wind 1.0 270 > th dose independent rect. 15 16
456 106.50 wind 9.0 270 < th dose independent rect. 14 7
466 106.56 radiation 40.0 270 < th dose independent rect. 14 7
482 106.62 temperature 30.0 270 < th dose independent rect. 2 7
487 106.63 radiation 40.0 90 < th dose independent rect. 16 21
489 106.64 atmosphere 995.0 270 > th dose independent rect. 9 17
491 106.66 atmosphere 1015.0 270 < th dose independent rect. 14 7
496 106.68 humidity 90.0 270 < th dose dependent rect. 9 5
497 106.69 humidity 70.0 10 > th dose independent rect. 5 15
517 106.75 radiation 40.0 270 < th dose dependent rect. 15 17
563 106.90 wind 9.0 30 < th dose dependent rect. 20 9
599 106.98 atmosphere 995.0 270 > th dose independent rect. 14 7
696 107.18 humidity 50.0 30 > th dose dependent rect. 20 9
700 107.20 radiation 10.0 270 > th dose independent rect. 10 3
803 107.36 radiation 40.0 90 < th dose dependent rect. 16 19
839 107.44 wind 1.0 270 > th dose independent rect. 3 16
869 107.50 radiation 40.0 10 < th dose independent rect. 16 20
900 107.59 humidity 50.0 30 > th dose dependent rect. 5 8
902 107.61 wind 9.0 30 < th dose independent rect. 5 15
958 107.71 radiation 40.0 10 < th dose independent rect. 5 7
985 107.80 humidity 50.0 270 > th dose independent rect. 14 7