Os09g0436900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1350 family protein.
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Os09g0436900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1350 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.22 | 0.5 | 10.7 | -0.877 | 1.58 | -1.18 | 0.79 | -0.0557 | -0.957 | 11 | 71.96 | 1304 | -- | -- |
| 113.16 | 0.495 | 10.7 | -0.89 | 1.6 | -1.19 | 0.792 | -- | -0.962 | 11 | 71.87 | 1289 | -- | -- |
| 115.69 | 0.501 | 10.7 | -0.88 | 1.6 | -1.18 | -- | 0.153 | -0.961 | 11 | 71.95 | 1279 | -- | -- |
| 115.73 | 0.501 | 10.7 | -0.853 | 1.61 | -1.17 | -- | -- | -0.953 | 11 | 71.98 | 1279 | -- | -- |
| 228.65 | 0.708 | 10.7 | -0.701 | -- | -0.799 | -- | -0.286 | -0.771 | -- | 72 | 1537 | -- | -- |
| 164.02 | 0.6 | 10.6 | -0.636 | 1.44 | -- | 0.551 | -- | -0.777 | 10.7 | -- | -- | -- | -- |
| 165.28 | 0.602 | 10.6 | -0.613 | 1.44 | -- | -- | -- | -0.775 | 10.7 | -- | -- | -- | -- |
| 221.01 | 0.695 | 10.7 | -0.709 | -- | -0.843 | -- | -- | -0.791 | -- | 73 | 1509 | -- | -- |
| 134.07 | 0.539 | 10.6 | -- | 1.57 | -1.06 | -- | -- | -0.827 | 11 | 72.35 | 1301 | -- | -- |
| 293.03 | 0.8 | 10.7 | -0.641 | -- | -- | -- | -- | -0.783 | -- | -- | -- | -- | -- |
| 175.2 | 0.619 | 10.6 | -- | 1.44 | -- | -- | -- | -0.707 | 10.7 | -- | -- | -- | -- |
| 234.25 | 0.715 | 10.7 | -- | -- | -0.829 | -- | -- | -0.712 | -- | 73 | 1509 | -- | -- |
| 303.89 | 0.814 | 10.7 | -- | -- | -- | -- | -- | -0.712 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.66 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 8 | 104.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 30 | 107.32 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 48 | 108.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 49 | 109.04 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 60 | 109.56 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 76 | 110.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 117 | 111.81 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 188 | 113.45 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 310 | 114.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 19 |
| 328 | 115.16 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 418 | 116.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 695 | 118.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 706 | 118.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 722 | 118.10 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 755 | 118.17 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 780 | 118.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 824 | 118.27 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 905 | 118.54 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 961 | 118.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 988 | 118.83 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |