BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0436900 Os09g0436900|AK119610
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43540.1  | chr3:15430770-15433035 FORWARD LENGTH=374          233   3e-62
AT5G47860.1  | chr5:19381656-19384310 FORWARD LENGTH=432           50   6e-07

>AT3G43540.1 | chr3:15430770-15433035 FORWARD LENGTH=374
          Length = 373

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 137/170 (80%)

Query: 1   MPMMEASPVYSAARNASGDAWKALFDLAGGLIQVYDQEAMLSLSKFVDQLPSVMNQVTEG 60
           +PM+EASPVY  ARNASGD  K L D AG  I   DQEA+ S +K VDQLPSV  +V +G
Sbjct: 200 LPMVEASPVYEMARNASGDVLKLLLDTAGTTILNNDQEALKSFTKLVDQLPSVFGEVGQG 259

Query: 61  VSEFKPTPPENREFCKNSYNVPNTLLVKFSIDAIDDTEIVEDVLKPRVESIGGQIKKVIL 120
           VSEF+P+P ENR   K SY+VP+TLLV+F+ DAID+T+++E+ L+PR+ESIGG ++KV L
Sbjct: 260 VSEFRPSPLENRNCFKCSYSVPHTLLVQFNSDAIDETDLLEETLRPRIESIGGTLEKVRL 319

Query: 121 SGTHLTPCIQDVKWQVGSEYTPADALAQGLKSLALNETRVLSRTIADWFR 170
           +G HLTPCIQD KWQ+G+ YTPADA+AQ LK++ L+ETRVLSRTI DWFR
Sbjct: 320 NGNHLTPCIQDPKWQIGTVYTPADAVAQALKTIPLSETRVLSRTIVDWFR 369



>AT5G47860.1 | chr5:19381656-19384310 FORWARD LENGTH=432
          Length = 431

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 40  MLSLSKFVDQLPSVMNQVTEGVSEFKPTPPENREFCKNSYNVPNTLLVKFSIDAIDDTEI 99
           M  +   V+QLP +   + +G  +F P P E R   ++ Y +   LL+KF  D+ID+T I
Sbjct: 263 MKQILPLVEQLPPLYMDLVKGREDFVPKPEETRRLIRSYYGISRNLLIKFEDDSIDETSI 322

Query: 100 VEDVLKPRVE-SIGGQIKKVI--LSGTHLTPCIQ 130
           +  VL   VE SI  ++   I  L G H  P  Q
Sbjct: 323 LAQVLG--VESSISSKLDMSIRTLPGDHGLPLQQ 354



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,706,954
Number of extensions: 145223
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)