Os09g0433500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0433500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.41 | 0.494 | 6.01 | 1.41 | 0.134 | -1.07 | 1.46 | 1.03 | -0.207 | 6.76 | 22.4 | 731 | -- | -- |
| 112.15 | 0.493 | 6.03 | 1.23 | 0.309 | -1.18 | 1.22 | -- | -0.222 | 6.28 | 22.2 | 1484 | -- | -- |
| 111.16 | 0.491 | 5.99 | 1.58 | 0.31 | -1.23 | -- | 1.07 | -0.158 | 7.36 | 22.1 | 1501 | -- | -- |
| 113.79 | 0.497 | 6.03 | 1.22 | 0.328 | -1.24 | -- | -- | -0.251 | 7.55 | 22.12 | 1501 | -- | -- |
| 115.6 | 0.501 | 5.99 | 1.59 | -- | -1.23 | -- | 1 | -0.136 | -- | 22.3 | 1986 | -- | -- |
| 167.11 | 0.606 | 6.12 | 0.735 | 0.31 | -- | 0.927 | -- | -0.658 | 7.39 | -- | -- | -- | -- |
| 169.29 | 0.609 | 6.12 | 0.758 | 0.311 | -- | -- | -- | -0.658 | 8.01 | -- | -- | -- | -- |
| 118.07 | 0.506 | 6.03 | 1.25 | -- | -1.26 | -- | -- | -0.214 | -- | 22.2 | 1953 | -- | -- |
| 147.83 | 0.566 | 6.07 | -- | 0.337 | -0.926 | -- | -- | -0.451 | 7.31 | 22.4 | 1481 | -- | -- |
| 174.59 | 0.617 | 6.13 | 0.761 | -- | -- | -- | -- | -0.654 | -- | -- | -- | -- | -- |
| 184.42 | 0.635 | 6.14 | -- | 0.316 | -- | -- | -- | -0.743 | 7.84 | -- | -- | -- | -- |
| 147.95 | 0.567 | 6.09 | -- | -- | -0.9 | -- | -- | -0.463 | -- | 22.4 | 731 | -- | -- |
| 189.85 | 0.643 | 6.15 | -- | -- | -- | -- | -- | -0.739 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 3 | 108.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 5 | 108.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 8 | 109.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 9 | 109.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 11 | 109.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 20 | 110.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 25 | 110.55 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 26 | 110.55 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 32 | 110.85 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 35 | 110.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 55 | 111.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 58 | 111.51 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 60 | 111.58 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 75 | 111.81 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 76 | 111.83 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 84 | 111.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 243 | 113.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 260 | 113.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 317 | 113.47 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 325 | 113.53 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 378 | 113.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 410 | 114.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 430 | 114.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 599 | 115.15 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 815 | 115.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 838 | 116.09 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 862 | 116.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 938 | 116.51 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 992 | 116.79 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |