BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0433500 Os09g0433500|Os09g0433500
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57500.1 | chr5:23286406-23287525 REVERSE LENGTH=319 232 2e-61
AT4G21060.1 | chr4:11240730-11244860 FORWARD LENGTH=742 52 6e-07
AT3G06440.1 | chr3:1972913-1975272 REVERSE LENGTH=620 49 2e-06
AT1G27120.1 | chr1:9421389-9423910 FORWARD LENGTH=674 48 6e-06
>AT5G57500.1 | chr5:23286406-23287525 REVERSE LENGTH=319
Length = 318
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/248 (48%), Positives = 155/248 (62%), Gaps = 9/248 (3%)
Query: 65 EFRLLIGVLTLPARYERRHLLRMVYALQQPAVASRARVDVRFVFCRVGSPEDRVLVSLEA 124
E R+LIG+LTLP +Y RRH LRM+Y Q V +VDV+FVFC + + +VLV+LE
Sbjct: 68 EIRILIGILTLPDQYSRRHFLRMIYGTQN--VPDGVKVDVKFVFCNLTKEDQKVLVALEI 125
Query: 125 MAYGDVVELDCPENMDNGKTHAYFSSVPRLFGGGEAA---YDFVMKADDDTFFRLPELAE 181
M Y D++ L+C ENM+ GKT+ YFSS+P +F +A Y +VMKADDDT+ RL L
Sbjct: 126 MRYDDIIILNCNENMNKGKTYTYFSSLPDIFNETDAQKPPYHYVMKADDDTYIRLESLVA 185
Query: 182 SLSRAPRRDLYYGCMVPCDYVRGSNEYMSGMGYLLSWDLVEWIVXXXXEI-EGRTGGPED 240
SL PR DLYYG ++PC + YMSGMGYL+SWD+ W+ EI + GPED
Sbjct: 186 SLRPLPREDLYYGYVIPCPSMDPFVHYMSGMGYLVSWDIAVWL--KDSEIPKKHLEGPED 243
Query: 241 RTLYSWLXXXXXXXXXVDVKPAMYNFPGRHP-CSHEFIPDTIAVHQLKDNRRWARTLQYF 299
+ W+ + K +MYNFP C+HE PDTIAVH LK+ +W RTL YF
Sbjct: 244 KVFGDWIREGRRGKNRFNAKWSMYNFPEPPTRCTHELWPDTIAVHLLKNQEKWIRTLNYF 303
Query: 300 NFTAALKP 307
N T+ LKP
Sbjct: 304 NVTSNLKP 311
>AT4G21060.1 | chr4:11240730-11244860 FORWARD LENGTH=742
Length = 741
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 66 FRLLIGVLTLPARYERRHLLRMVYALQQPAVASRARVDVRFVFCRVGSPEDRVLVSLEAM 125
FRL +GVL+ + R +R + +Q P++ S + V RF E ++ EA
Sbjct: 493 FRLFMGVLSATNHFSERMAVRKTW-MQHPSIKS-SDVVARFFVALNPRKEVNAMLKKEAE 550
Query: 126 AYGDVVELDCPENMDNGKTHAYFSSVPRLFGGGEAAYDFVMKADDDTFFRLPELAESLSR 185
+GD+V L MD + + FG ++MK DDDTF R+ + + +
Sbjct: 551 YFGDIVILPF---MDRYELVVLKTIAICEFGVQNVTAPYIMKCDDDTFIRVESILKQIDG 607
Query: 186 -APRRDLYYGCMV----PCDYVRGSNE-----------YMSGMGYLLSWDLVEWIVXXXX 229
+P + LY G + P + + Y +G GY++S ++ ++IV
Sbjct: 608 VSPEKSLYMGNLNLRHRPLRTGKWTVTWEEWPEAVYPPYANGPGYIISSNIAKYIVSQNS 667
Query: 230 EIEGRTGGPEDRTLYSWL 247
+ R ED ++ W+
Sbjct: 668 RHKLRLFKMEDVSMGLWV 685
>AT3G06440.1 | chr3:1972913-1975272 REVERSE LENGTH=620
Length = 619
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 66 FRLLIGVLTLPARYERRHLLRMVYALQQPAVASRARVDVRFVFCRVGSPEDRVLVSLEAM 125
LL+GV + ++RR LR + +Q AV S +V VRF+ + + + + E+
Sbjct: 371 IELLVGVFSTGNNFKRRMALRRSW-MQYEAVRS-GKVAVRFLIGLHTNEKVNLEMWRESK 428
Query: 126 AYGDVVELDCPE--NMDNGKTHAYFSSVPRLFGGGEAAYDFVMKADDDTFFRLPELAESL 183
AYGD+ + + + + KT A + G ++MK DDD F R+ EL SL
Sbjct: 429 AYGDIQFMPFVDYYGLLSLKTVALC-----ILGTKVIPAKYIMKTDDDAFVRIDELLSSL 483
Query: 184 SRAPRRDLYYGCM---VPCDYVRGSNEYM--------------SGMGYLLSWDLVEWIV 225
P L YG + D +GS ++ G GY++S D+ +++V
Sbjct: 484 EERPSSALLYGLISFDSSPDREQGSKWFIPKEEWPLDSYPPWAHGPGYIISHDIAKFVV 542
>AT1G27120.1 | chr1:9421389-9423910 FORWARD LENGTH=674
Length = 673
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 21/196 (10%)
Query: 68 LLIGVLTLPARYERRHLLRMVYALQQPAVASRARVDVRFVFCRVGSPEDRVLVSLEAMAY 127
L IG+L+ + R +R + +QQ V S ++V RF E V + EA +
Sbjct: 427 LFIGILSAGNHFAERMAVRKSW-MQQKLVRS-SKVVARFFVALHARKEVNVDLKKEAEYF 484
Query: 128 GDVVELDCPENMDNGKTHAYFSSVPRLFGGGEAAYDFVMKADDDTFFRLPELAESLSRAP 187
GD+V + MD+ + +G A +VMK DDDTF R+ + + +
Sbjct: 485 GDIVIV---PYMDHYDLVVLKTVAICEYGVNTVAAKYVMKCDDDTFVRVDAVIQEAEKVK 541
Query: 188 RRDLYYGCMVPCDY--VRGSN--------------EYMSGMGYLLSWDLVEWIVXXXXEI 231
R+ Y + ++ +R Y +G GY+LS+D+ ++IV +
Sbjct: 542 GRESLYIGNINFNHKPLRTGKWAVTFEEWPEEYYPPYANGPGYILSYDVAKFIVDDFEQK 601
Query: 232 EGRTGGPEDRTLYSWL 247
R ED ++ W+
Sbjct: 602 RLRLFKMEDVSMGMWV 617
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,725,273
Number of extensions: 222929
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 4
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)