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Os09g0428900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Conserved protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0219) R2 : 0.000624
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0245 (0.046) R2dN8 : 0.000805 R2N8 : 0.000624
σ : 0.412
deviance : 77.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.59 0.357 10.5 -0.767 0.128 0.604 -0.593 -0.774 -0.246 22.8 20.31 1161 -- --
58.82 0.357 10.4 -0.644 0.121 0.733 -0.72 -- -0.222 23.2 20.2 1175 -- --
58.81 0.357 10.5 -0.765 0.118 0.565 -- -0.964 -0.248 22.4 20.3 1053 -- --
60.93 0.364 10.4 -0.616 0.12 0.732 -- -- -0.216 22.3 20.2 1144 -- --
59.61 0.36 10.5 -0.772 -- 0.601 -- -0.938 -0.253 -- 20.33 1053 -- --
70.58 0.394 10.4 -0.352 0.179 -- -0.754 -- -0.065 23.7 -- -- -- --
73.01 0.4 10.4 -0.321 0.184 -- -- -- -0.0612 23.1 -- -- -- --
61.68 0.366 10.4 -0.616 -- 0.747 -- -- -0.218 -- 20.13 1076 -- --
69.17 0.387 10.4 -- 0.136 0.485 -- -- -0.0986 21.9 20.4 1084 -- --
75.13 0.405 10.4 -0.317 -- -- -- -- -0.0597 -- -- -- -- --
75.72 0.407 10.4 -- 0.181 -- -- -- -0.0255 23 -- -- -- --
70.07 0.39 10.4 -- -- 0.502 -- -- -0.112 -- 20.31 994 -- --
77.77 0.412 10.4 -- -- -- -- -- -0.0245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.89 temperature 10 270 > th dose dependent rect. 17 22
2 56.94 temperature 20 1440 > th dose independent rect. 18 11
3 56.95 temperature 20 1440 > th dose independent rect. 18 13
4 56.95 temperature 20 1440 < th dose independent rect. 18 13
5 56.96 temperature 20 1440 < th dose independent rect. 18 11
33 57.11 temperature 20 1440 > th dose independent sin 13 NA
42 57.16 temperature 20 1440 < th dose independent sin 12 NA
52 57.21 temperature 20 1440 > th dose independent rect. 12 19
61 57.24 temperature 20 1440 < th dose independent rect. 12 19
68 57.27 radiation 30 4320 < th dose independent rect. 22 10
76 57.30 radiation 30 4320 < th dose independent rect. 24 8
81 57.31 radiation 20 4320 > th dose dependent rect. 6 2
105 57.36 radiation 30 4320 < th dose independent rect. 6 2
121 57.43 radiation 30 4320 < th dose independent rect. 2 6
167 57.59 wind 1 43200 > th dose dependent rect. 1 1
220 57.77 wind 3 43200 > th dose independent rect. 1 2
227 57.80 wind 3 43200 > th dose independent rect. 23 4
238 57.85 temperature 20 1440 < th dose independent rect. 24 7
365 58.13 temperature 20 1440 > th dose independent rect. 5 2
376 58.14 wind 9 43200 < th dose dependent rect. 1 1
396 58.17 wind 1 43200 > th dose dependent rect. 23 4
413 58.21 temperature 20 1440 < th dose independent rect. 5 2
433 58.24 wind 3 43200 < th dose independent rect. 23 4
486 58.34 temperature 20 1440 < th dose independent rect. 1 1
497 58.36 temperature 20 1440 > th dose independent no NA NA
521 58.40 radiation 30 4320 > th dose independent rect. 7 1
540 58.41 wind 3 43200 < th dose independent rect. 1 2
545 58.42 temperature 20 1440 < th dose independent no NA NA
570 58.49 wind 1 43200 > th dose dependent rect. 22 6
585 58.55 temperature 20 1440 > th dose independent rect. 3 1
589 58.56 temperature 20 1440 > th dose independent rect. 5 23
596 58.58 temperature 20 1440 < th dose independent rect. 3 1
628 58.67 wind 9 43200 > th dose independent rect. 21 17
649 58.73 wind 9 43200 < th dose dependent rect. 23 4
656 58.75 temperature 15 270 > th dose dependent rect. 5 9
669 58.80 humidity 90 14400 > th dose dependent rect. 11 17
679 58.82 wind 9 43200 < th dose dependent rect. 22 6
686 58.83 humidity 90 14400 > th dose dependent rect. 7 22
691 58.84 humidity 90 14400 > th dose dependent rect. 9 20
702 58.87 wind 9 43200 > th dose independent rect. 10 3
710 58.88 wind 9 43200 > th dose independent rect. 1 13
715 58.89 wind 9 43200 > th dose independent rect. 3 11
727 58.91 atmosphere 995 43200 < th dose independent rect. 22 16
744 58.94 atmosphere 995 43200 < th dose independent rect. 23 14
748 58.95 wind 9 43200 < th dose independent rect. 21 17
754 58.96 atmosphere 995 43200 > th dose independent rect. 1 11
763 58.97 humidity 90 14400 > th dose dependent sin 16 NA
769 59.01 atmosphere 995 43200 > th dose independent rect. 2 9
789 59.03 wind 9 14400 > th dose dependent rect. 21 16
815 59.06 wind 9 43200 > th dose independent sin 4 NA
820 59.06 wind 9 43200 > th dose dependent rect. 10 4
833 59.08 atmosphere 995 43200 < th dose dependent sin 9 NA
838 59.09 wind 9 43200 > th dose independent rect. 21 20
841 59.09 humidity 90 14400 > th dose dependent rect. 12 22
842 59.09 humidity 90 14400 > th dose dependent rect. 2 23
844 59.09 humidity 90 14400 > th dose dependent rect. 23 23
846 59.10 atmosphere 995 43200 > th dose independent rect. 4 5
848 59.10 atmosphere 995 43200 < th dose independent rect. 2 9
855 59.11 humidity 90 14400 > th dose independent rect. 18 6
856 59.11 wind 9 43200 < th dose independent rect. 3 11
862 59.12 atmosphere 995 43200 > th dose independent rect. 3 7
865 59.12 wind 9 43200 < th dose independent rect. 1 13
874 59.13 humidity 90 14400 > th dose dependent no NA NA
885 59.14 humidity 90 14400 > th dose dependent rect. 20 23
888 59.15 atmosphere 995 43200 > th dose independent rect. 22 16
889 59.15 atmosphere 995 43200 > th dose independent rect. 19 19
896 59.15 humidity 90 14400 > th dose dependent rect. 18 23
899 59.16 humidity 90 14400 > th dose independent rect. 20 4
908 59.16 humidity 90 14400 > th dose dependent rect. 15 23
911 59.17 wind 9 43200 < th dose independent rect. 10 2
928 59.18 wind 9 43200 > th dose dependent rect. 9 8
938 59.19 atmosphere 995 43200 < th dose dependent rect. 22 12
972 59.22 atmosphere 995 43200 < th dose independent rect. 5 3
995 59.23 atmosphere 995 43200 > th dose independent rect. 5 3
996 59.23 atmosphere 995 43200 < th dose independent rect. 4 5