BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0428900 Os09g0428900|AK100970
         (391 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28020.1  | chr4:13933389-13935249 REVERSE LENGTH=352          364   e-101

>AT4G28020.1 | chr4:13933389-13935249 REVERSE LENGTH=352
          Length = 351

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/310 (57%), Positives = 228/310 (73%), Gaps = 34/310 (10%)

Query: 60  VRAQQSLRKALSEQELSSDEKKKLSQSPKSFPMASIGVVQSCFSTRNGTPRQPLVVPLAR 119
           V+AQQ+LR+AL++ E S D    +      +PM  IG +QSCFSTRNGTPRQPL+V LAR
Sbjct: 66  VKAQQALREALAQTE-SHDLHSTI------YPMRPIGTIQSCFSTRNGTPRQPLLVSLAR 118

Query: 120 ATVMLDPARVPAEALEGLADYSHCWILYVFHLNTDLDKMWNDPARSKLKAKVRVPRLKGG 179
           A ++ DPA VP  +LEGL +YSHCWILYVFHLNTD++K+W  P++SKLKAKVRVPRL G 
Sbjct: 119 ACLIFDPALVPPASLEGLEEYSHCWILYVFHLNTDIEKLWRKPSQSKLKAKVRVPRLNGE 178

Query: 180 KMGVLATRSPHRPNPIGLSVAKVEAVDGHSILLSGVDLVDGTPVLDIKPYLPYSDGVKGA 239
           + GV ATRSPHRP PIGL+VAKVE +    +LLSGVDLVDGTPVLDIKPYLPYSD ++GA
Sbjct: 179 RKGVFATRSPHRPCPIGLTVAKVEEIQKDKVLLSGVDLVDGTPVLDIKPYLPYSDSIQGA 238

Query: 240 AIPNWLEVDGALAVESIHFSEHFISSLSDCWMHVKKQSLYASADEFQDLVKEVLSWDIRS 299
           ++PNW++ D +LAV S+ FS+ F SS++ CW  ++K+SLY+SADEF+ L+ +VLSWDIRS
Sbjct: 239 SVPNWVKEDCSLAVASVTFSDTFSSSITSCWKLIEKKSLYSSADEFRSLITQVLSWDIRS 298

Query: 300 LSQRIRPHDVTIKDVTDNGGSKIDNGCSNDEDRQSVDPSTSVVYHLHLEGIDVSYRIDQD 359
           +SQR +P D                    DE+         +VYHL LEG+DVSY ID +
Sbjct: 299 MSQRNKPQDTL------------------DEE---------IVYHLVLEGLDVSYMIDNE 331

Query: 360 SNIVVENAAL 369
           SNI+V++ +L
Sbjct: 332 SNILVQDVSL 341



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,493,789
Number of extensions: 308514
Number of successful extensions: 802
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 801
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,337,553
Effective search space: 2417890370
Effective search space used: 2417890370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)