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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0421800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, U1-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0145) R2 : 0.000695
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0171 (0.0304) R2dN8 : 0.000898 R2N8 : 0.000695
σ : 0.272
deviance : 33.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.21 0.267 2.88 -0.0918 0.0152 0.389 0.0586 1.5 0.00763 8.87 1015 634 -- --
33.31 0.271 2.87 -0.0684 0.0162 0.373 0.00917 -- 0.0135 6.22 1015 492 -- --
32.21 0.264 2.88 -0.0904 0.0173 0.385 -- 1.47 0.00727 7.22 1015 638 -- --
33.31 0.271 2.87 -0.0683 0.0162 0.373 -- -- 0.0134 6.29 1015 638 -- --
32.23 0.264 2.88 -0.0897 -- 0.381 -- 1.48 0.00772 -- 1015 634 -- --
33.85 0.273 2.88 -0.0686 0.0192 -- 0.0143 -- 0.00916 3.6 -- -- -- --
33.85 0.272 2.88 -0.0688 0.0193 -- -- -- 0.00908 3.65 -- -- -- --
33.32 0.27 2.88 -0.0678 -- 0.372 -- -- 0.0138 -- 1015 634 -- --
33.43 0.271 2.87 -- 0.0153 0.373 -- -- 0.021 6.53 1015 469 -- --
33.87 0.272 2.88 -0.068 -- -- -- -- 0.00959 -- -- -- -- --
33.98 0.273 2.87 -- 0.0179 -- -- -- 0.0167 3.68 -- -- -- --
33.45 0.27 2.87 -- -- 0.372 -- -- 0.0213 -- 1015 634 -- --
33.99 0.272 2.87 -- -- -- -- -- 0.0171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.39 radiation 1.0 90 < th dose independent rect. 8 1
4 28.39 radiation 1.0 90 < th dose dependent rect. 8 1
11 29.15 humidity 90.0 270 > th dose dependent rect. 20 1
13 29.78 radiation 1.0 1440 < th dose independent rect. 9 1
14 29.78 radiation 1.0 1440 < th dose dependent rect. 9 1
15 29.83 radiation 1.0 1440 > th dose independent rect. 9 1
22 30.48 atmosphere 1015.0 30 < th dose independent rect. 21 23
28 30.63 temperature 10.0 1440 > th dose independent rect. 21 1
31 30.63 temperature 30.0 1440 < th dose independent rect. 21 1
35 30.63 humidity 50.0 1440 > th dose independent rect. 21 1
41 30.63 atmosphere 995.0 1440 > th dose independent rect. 21 1
42 30.63 radiation 1.0 1440 < th dose independent rect. 21 1
62 30.63 temperature 10.0 1440 > th dose independent rect. 22 23
65 30.63 radiation 40.0 1440 < th dose dependent rect. 21 1
68 30.64 temperature 25.0 30 > th dose independent rect. 20 1
79 30.68 wind 3.0 30 > th dose independent rect. 20 1
80 30.68 temperature 20.0 30 > th dose dependent rect. 20 1
81 30.69 atmosphere 1005.0 30 > th dose dependent rect. 20 1
83 30.70 humidity 90.0 30 < th dose independent rect. 20 1
90 30.73 humidity 80.0 30 > th dose independent rect. 20 1
91 30.73 wind 9.0 30 < th dose independent rect. 21 23
92 30.74 wind 1.0 30 > th dose dependent rect. 20 1
94 30.75 atmosphere 1005.0 30 > th dose independent rect. 20 1
95 30.76 wind 5.0 30 < th dose independent rect. 20 1
99 30.77 temperature 10.0 30 > th dose independent rect. 20 1
101 30.77 temperature 30.0 30 < th dose independent rect. 20 1
102 30.77 humidity 50.0 30 > th dose independent rect. 20 1
105 30.77 atmosphere 995.0 30 > th dose independent rect. 20 1
107 30.77 atmosphere 1010.0 30 < th dose independent rect. 20 1
109 30.77 radiation 1.0 30 < th dose independent rect. 20 1
114 30.77 precipitation 0.1 30 < th dose independent rect. 20 1
115 30.77 temperature 10.0 30 > th dose independent rect. 21 23
116 30.77 radiation 1.0 30 < th dose dependent rect. 20 1
121 30.77 precipitation 0.1 30 < th dose dependent rect. 20 1
123 30.79 humidity 50.0 30 > th dose dependent rect. 20 1
125 30.81 wind 9.0 30 < th dose dependent rect. 20 1
135 30.85 humidity 90.0 30 < th dose dependent rect. 20 1
140 30.90 atmosphere 1015.0 30 < th dose dependent rect. 20 1
152 31.06 wind 9.0 1440 < th dose independent rect. 21 1
154 31.09 temperature 30.0 30 < th dose dependent rect. 20 1
164 31.18 radiation 1.0 1440 > th dose independent rect. 4 1
174 31.18 radiation 1.0 1440 > th dose dependent rect. 4 1
189 31.23 radiation 1.0 720 < th dose independent rect. 13 2
192 31.23 radiation 1.0 720 < th dose dependent rect. 13 2
196 31.24 radiation 10.0 1440 < th dose dependent rect. 1 4
202 31.29 radiation 10.0 1440 < th dose dependent rect. 23 6
209 31.33 humidity 90.0 720 > th dose independent rect. 11 2
211 31.34 humidity 90.0 720 > th dose dependent rect. 11 2
253 31.41 radiation 1.0 1440 > th dose independent rect. 9 3
260 31.42 radiation 1.0 1440 < th dose independent rect. 1 4
277 31.47 radiation 1.0 1440 < th dose independent rect. 23 6
288 31.53 radiation 10.0 1440 < th dose dependent rect. 19 10
306 31.61 atmosphere 1005.0 270 < th dose independent rect. 20 1
310 31.62 humidity 90.0 270 > th dose independent rect. 20 1
325 31.67 wind 1.0 30 < th dose independent rect. 23 1
333 31.68 radiation 1.0 720 < th dose independent rect. 12 12
342 31.70 radiation 1.0 1440 < th dose independent rect. 19 10
356 31.72 radiation 1.0 720 < th dose dependent rect. 12 11
359 31.73 atmosphere 1005.0 90 < th dose independent rect. 20 4
397 31.79 humidity 90.0 270 > th dose dependent sin 17 NA
401 31.81 wind 7.0 4320 < th dose independent rect. 17 2
404 31.81 humidity 60.0 14400 > th dose independent rect. 22 10
407 31.83 humidity 60.0 14400 > th dose independent rect. 7 1
408 31.83 wind 7.0 4320 > th dose independent rect. 17 2
430 31.86 humidity 60.0 14400 < th dose independent rect. 6 1
432 31.86 humidity 60.0 14400 < th dose independent rect. 20 1
434 31.86 radiation 20.0 14400 > th dose independent rect. 17 1
489 31.86 humidity 60.0 14400 < th dose dependent rect. 6 1
491 31.86 humidity 60.0 14400 < th dose dependent rect. 20 1
493 31.86 radiation 20.0 14400 > th dose dependent rect. 17 1
552 31.88 radiation 1.0 720 > th dose independent rect. 15 2
553 31.88 humidity 60.0 14400 > th dose independent rect. 1 7
571 31.91 radiation 1.0 1440 > th dose independent rect. 11 4
576 31.91 humidity 50.0 1440 > th dose independent rect. 21 14
581 31.92 wind 1.0 1440 < th dose independent rect. 6 1
594 31.93 radiation 1.0 720 < th dose independent rect. 12 17
602 31.94 radiation 1.0 1440 > th dose independent rect. 11 1
603 31.94 radiation 1.0 1440 > th dose independent rect. 13 2
613 31.94 radiation 1.0 720 > th dose independent rect. 14 5
633 31.95 radiation 1.0 720 > th dose independent rect. 10 9
656 31.95 radiation 1.0 720 < th dose dependent rect. 12 17
667 31.97 wind 1.0 1440 > th dose independent rect. 6 1
688 31.98 radiation 1.0 720 > th dose independent sin 17 NA
696 31.98 atmosphere 1015.0 720 < th dose independent rect. 15 18
704 31.99 radiation 1.0 720 < th dose independent sin 18 NA
732 32.00 radiation 1.0 720 < th dose dependent sin 18 NA
734 32.00 wind 7.0 4320 > th dose dependent rect. 18 1
763 32.03 humidity 60.0 14400 > th dose independent rect. 20 12
775 32.04 atmosphere 1015.0 720 < th dose independent rect. 21 6
776 32.04 atmosphere 1015.0 720 < th dose independent rect. 21 16
800 32.06 humidity 50.0 30 > th dose dependent rect. 20 14
801 32.06 atmosphere 1015.0 30 < th dose dependent rect. 20 14
808 32.07 radiation 1.0 720 > th dose independent rect. 8 9
809 32.07 atmosphere 1015.0 720 < th dose independent rect. 21 23
855 32.10 atmosphere 1015.0 720 < th dose independent rect. 21 14
880 32.12 humidity 80.0 4320 > th dose independent rect. 23 1
907 32.14 humidity 50.0 720 > th dose dependent rect. 12 1
928 32.15 atmosphere 1015.0 720 < th dose independent rect. 13 14
935 32.15 atmosphere 1015.0 720 < th dose independent rect. 10 23
953 32.16 atmosphere 1015.0 720 < th dose independent rect. 5 22
968 32.17 atmosphere 1015.0 720 < th dose independent rect. 11 16