BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0421800 Os09g0421800|Os09g0421800
         (494 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61190.1  | chr5:24615480-24619886 FORWARD LENGTH=996           49   9e-06

>AT5G61190.1 | chr5:24615480-24619886 FORWARD LENGTH=996
          Length = 995

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 392 ITCSLCKVTMTSPRALVEHRASLLHRSNLAPLRSGNKATTEAAQPAEKKTEKPEASEWNS 451
           + C +C+++ T+      H     HR+NL  L+SG K+      PAE   E  E    N 
Sbjct: 297 LLCKVCQISFTNNDTYKNHTYGKKHRNNL-ELQSG-KSKNILVGPAEPSKEVLEKHNMNK 354

Query: 452 S----AHHHQNRMYYCDICEVRCSSEKMMASHLAGKRH 485
                +    N  + C +C V C S+ +  SHL GK+H
Sbjct: 355 KVMIESRAQANAEFVCLMCNVVCQSQIVFNSHLRGKKH 392



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,483,081
Number of extensions: 451417
Number of successful extensions: 2220
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2289
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 391
Effective length of database: 8,282,721
Effective search space: 3238543911
Effective search space used: 3238543911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)