Os09g0420200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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Os09g0420200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-directed DNA polymerase (Reverse transcriptase) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.87 | 0.564 | 4.36 | 0.414 | 0.938 | -0.837 | 0.208 | -1.01 | 0.247 | 18.8 | 21.8 | 862 | -- | -- |
| 146.34 | 0.563 | 4.33 | 0.687 | 0.956 | -0.79 | -0.111 | -- | 0.311 | 18.8 | 21.8 | 778 | -- | -- |
| 143.97 | 0.559 | 4.36 | 0.426 | 0.939 | -0.833 | -- | -0.952 | 0.25 | 18.8 | 21.77 | 860 | -- | -- |
| 146.37 | 0.563 | 4.33 | 0.688 | 0.956 | -0.789 | -- | -- | 0.311 | 18.8 | 21.8 | 778 | -- | -- |
| 183.38 | 0.631 | 4.33 | 0.353 | -- | -0.733 | -- | -0.917 | 0.241 | -- | 22.2 | 1325 | -- | -- |
| 170.26 | 0.612 | 4.38 | 0.4 | 0.857 | -- | -0.117 | -- | 0.0722 | 18.2 | -- | -- | -- | -- |
| 170.3 | 0.611 | 4.38 | 0.401 | 0.856 | -- | -- | -- | 0.0719 | 18.2 | -- | -- | -- | -- |
| 186.71 | 0.636 | 4.31 | 0.646 | -- | -0.749 | -- | -- | 0.307 | -- | 22.21 | 1325 | -- | -- |
| 156.73 | 0.583 | 4.35 | -- | 0.916 | -0.612 | -- | -- | 0.208 | 18.7 | 22.23 | 792 | -- | -- |
| 208.31 | 0.674 | 4.36 | 0.378 | -- | -- | -- | -- | 0.0532 | -- | -- | -- | -- | -- |
| 174.54 | 0.618 | 4.39 | -- | 0.85 | -- | -- | -- | 0.0272 | 18.3 | -- | -- | -- | -- |
| 196.49 | 0.653 | 4.33 | -- | -- | -0.598 | -- | -- | 0.195 | -- | 22.36 | 1285 | -- | -- |
| 212.07 | 0.68 | 4.37 | -- | -- | -- | -- | -- | 0.0113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.71 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 3 | 144.80 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 5 | 145.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 6 | 145.16 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 8 | 145.57 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 9 | 145.59 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 11 | 145.77 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 20 | 146.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 21 | 146.19 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 29 | 146.44 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 35 | 146.58 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 2 |
| 44 | 146.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 48 | 146.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 59 | 147.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 71 | 147.13 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 82 | 147.20 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 85 | 147.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 87 | 147.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 88 | 147.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 93 | 147.30 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 104 | 147.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 160 | 147.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 210 | 148.25 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 211 | 148.25 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 216 | 148.29 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 222 | 148.36 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 233 | 148.48 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 5 |
| 238 | 148.55 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 251 | 148.64 | temperature | 15.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 254 | 148.65 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 286 | 148.98 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 351 | 149.40 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 352 | 149.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 355 | 149.44 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 358 | 149.48 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 373 | 149.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 387 | 149.71 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 407 | 149.85 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 408 | 149.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 427 | 149.95 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 18 |
| 446 | 150.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 449 | 150.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 456 | 150.18 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 457 | 150.18 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 466 | 150.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 480 | 150.32 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 493 | 150.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 510 | 150.45 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 13 |
| 527 | 150.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 536 | 150.62 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 578 | 150.82 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 590 | 150.87 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 12 |
| 593 | 150.88 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 594 | 150.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 627 | 151.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 14 |
| 632 | 151.07 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 2 |
| 646 | 151.13 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 655 | 151.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 669 | 151.25 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 674 | 151.26 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 715 | 151.46 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 739 | 151.55 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 776 | 151.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 806 | 151.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 869 | 152.01 | temperature | 20.0 | 720 | < th | dose independent | sin | 8 | NA |
| 881 | 152.03 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 17 |
| 889 | 152.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 913 | 152.10 | temperature | 25.0 | 10 | > th | dose independent | rect. | 24 | 11 |
| 922 | 152.11 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 961 | 152.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 15 |
| 992 | 152.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 994 | 152.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 998 | 152.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |