BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0420200 Os09g0420200|AK068903
         (202 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24255.1  | chr3:8789471-8793208 FORWARD LENGTH=747             87   5e-18

>AT3G24255.1 | chr3:8789471-8793208 FORWARD LENGTH=747
          Length = 746

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 72  LPITYLGLPLGTRKPTKAEVHPILDKLAKKVADWKPKMLSIDGRLCLIKSVLMALPVHYM 131
           LP+ YLGLPL T+K T ++  P+++K+  ++  W  + LS  GRL LI SV+ +L   +M
Sbjct: 23  LPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWM 82

Query: 132 SVLQFPRWAIKYIERKCRGLLWKGQEEVSGGHCLVSWRKVCSLVEKGGLGVKDM 185
           S  + P   IK I+  C   LW G  E++     V+W  VC+  ++GGLG++ +
Sbjct: 83  SAFRLPSACIKEIDSICSSFLWSGP-ELNTKKAKVAWSDVCTPKDEGGLGIRSL 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,644,981
Number of extensions: 182700
Number of successful extensions: 372
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)