Os09g0414500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ZF-HD homeobox protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0414500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to ZF-HD homeobox protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.96 | 0.193 | 3.03 | 0.447 | 0.0269 | -0.27 | -0.286 | 1.23 | 0.00782 | 5.05 | 26.7 | 1746 | -- | -- |
| 17.24 | 0.193 | 3.06 | 0.181 | 0.0514 | -0.127 | -0.294 | -- | -0.0479 | 5 | 26.72 | 2461 | -- | -- |
| 17.14 | 0.193 | 3.02 | 0.513 | 0.0324 | -0.319 | -- | 1.67 | 0.009 | 7.3 | 27.37 | 1748 | -- | -- |
| 17.44 | 0.195 | 3.06 | 0.182 | 0.0551 | -0.123 | -- | -- | -0.048 | 6.02 | 26.77 | 2603 | -- | -- |
| 17.19 | 0.193 | 3.02 | 0.511 | -- | -0.32 | -- | 1.63 | 0.0131 | -- | 27.17 | 1780 | -- | -- |
| 17.84 | 0.198 | 3.06 | 0.144 | 0.051 | -- | -0.309 | -- | -0.0498 | 5.41 | -- | -- | -- | -- |
| 18.04 | 0.199 | 3.06 | 0.144 | 0.056 | -- | -- | -- | -0.0481 | 7.21 | -- | -- | -- | -- |
| 17.52 | 0.195 | 3.06 | 0.177 | -- | -0.138 | -- | -- | -0.044 | -- | 26.46 | 1743 | -- | -- |
| 18.26 | 0.199 | 3.06 | -- | 0.0551 | -0.0822 | -- | -- | -0.0739 | 5.83 | 30.46 | 1532 | -- | -- |
| 18.2 | 0.199 | 3.06 | 0.145 | -- | -- | -- | -- | -0.0472 | -- | -- | -- | -- | -- |
| 18.58 | 0.202 | 3.06 | -- | 0.0575 | -- | -- | -- | -0.0642 | 7.04 | -- | -- | -- | -- |
| 18.37 | 0.2 | 3.07 | -- | -- | -0.107 | -- | -- | -0.0649 | -- | 26.91 | 1773 | -- | -- |
| 18.75 | 0.202 | 3.06 | -- | -- | -- | -- | -- | -0.0632 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 2 | 16.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 5 | 16.48 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 6 | 16.49 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 15 | 16.51 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 17 | 16.51 | wind | 3 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 26 | 16.53 | wind | 1 | 720 | > th | dose independent | rect. | 9 | 5 |
| 28 | 16.53 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 36 | 16.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 38 | 16.54 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 55 | 16.56 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 75 | 16.58 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 92 | 16.59 | wind | 7 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 115 | 16.61 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 162 | 16.63 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 164 | 16.63 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 165 | 16.63 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 167 | 16.63 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 180 | 16.64 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 182 | 16.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 197 | 16.64 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 199 | 16.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 200 | 16.64 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 215 | 16.65 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 216 | 16.65 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 226 | 16.65 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 230 | 16.65 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 238 | 16.65 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 257 | 16.66 | wind | 3 | 43200 | < th | dose independent | sin | 9 | NA |
| 265 | 16.66 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 268 | 16.66 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 303 | 16.67 | wind | 3 | 43200 | > th | dose independent | sin | 9 | NA |
| 335 | 16.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 353 | 16.67 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 363 | 16.67 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 414 | 16.68 | wind | 5 | 43200 | < th | dose dependent | sin | 3 | NA |
| 424 | 16.68 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 445 | 16.68 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 519 | 16.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 585 | 16.70 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 591 | 16.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 604 | 16.70 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 649 | 16.71 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 684 | 16.71 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 756 | 16.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 800 | 16.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 808 | 16.72 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 851 | 16.73 | humidity | 80 | 270 | < th | dose independent | rect. | 1 | 5 |
| 890 | 16.73 | humidity | 90 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 928 | 16.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 961 | 16.74 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 3 |