BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0414500 Os09g0414500|AK058840
(113 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101 57 1e-09
AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89 53 4e-08
AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250 51 2e-07
AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103 50 3e-07
AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243 47 2e-06
AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311 47 2e-06
AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263 47 2e-06
>AT3G28917.1 | chr3:10925014-10925316 FORWARD LENGTH=101
Length = 100
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 1 MMKRLVVLRR---------REPAVRFSCCGVRYGECRRNHAASTGGHAVDGCREFIAAED 51
M KR VVLRR A + VRYGEC++NHAA+ GG+AVDGCREF+A+
Sbjct: 1 MRKRQVVLRRASPEEPSRSSSTASSLTVRTVRYGECQKNHAAAVGGYAVDGCREFMASRG 60
Query: 52 XXXXXXXXXXXXXXXXXXXXXXXCHRSFHRRVQVYEVAWD 91
CHRSFHRR EV D
Sbjct: 61 ---------EEGTVAALTCAACGCHRSFHRREIETEVVCD 91
>AT1G18835.1 | chr1:6496106-6496372 REVERSE LENGTH=89
Length = 88
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 1 MMKRLVVLRRREPAVRFSCC--GVRYGECRRNHAASTGGHAVDGCREFIAAEDXXXXXXX 58
M KR VV+++R+ + + VRY EC++NHAA+ GG+AVDGCREF+A+
Sbjct: 1 MKKRQVVIKQRKSSYTMTSSSSNVRYVECQKNHAANIGGYAVDGCREFMAS--------- 51
Query: 59 XXXXXXXXXXXXXXXXCHRSFHRR 82
CHR+FHRR
Sbjct: 52 ----GGDDALTCAACGCHRNFHRR 71
>AT3G50890.1 | chr3:18916420-18917169 FORWARD LENGTH=250
Length = 249
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 21 GVRYGECRRNHAASTGGHAVDGCREFIAAEDXXXXXXXXXXXXXXXXXXXXXXXCHRSFH 80
G +Y EC++NHAASTGGH VDGC EF+A + CHRSFH
Sbjct: 57 GAKYRECQKNHAASTGGHVVDGCCEFMAGGE----------EGTLGALKCAACNCHRSFH 106
Query: 81 RRVQVY 86
R+ +VY
Sbjct: 107 RK-EVY 111
>AT1G74660.1 | chr1:28047742-28048050 REVERSE LENGTH=103
Length = 102
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 21 GVRYGECRRNHAASTGGHAVDGCREFIAAEDXXXXXXXXXXXXXXXXXXXXXXXCHRSFH 80
VRY EC++NHAA+ GG+AVDGCREF+AA CHR+FH
Sbjct: 36 NVRYVECQKNHAANIGGYAVDGCREFMAA----------GVEGTVDALRCAACGCHRNFH 85
Query: 81 RR 82
R+
Sbjct: 86 RK 87
>AT1G69600.1 | chr1:26182470-26183198 FORWARD LENGTH=243
Length = 242
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 21 GVRYGECRRNHAASTGGHAVDGCREFIAAEDXXXXXXXXXXXXXXXXXXXXXXXCHRSFH 80
GV Y EC +NHAA+ GGHA+DGC EF+ + CHR+FH
Sbjct: 28 GVCYKECLKNHAANLGGHALDGCGEFMPSP--------TATSTDPSSLRCAACGCHRNFH 79
Query: 81 RR 82
RR
Sbjct: 80 RR 81
>AT2G02540.1 | chr2:684302-685234 FORWARD LENGTH=311
Length = 310
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 16/75 (21%)
Query: 8 LRRREPAVRFSCCGVRYGECRRNHAASTGGHAVDGCREFIAAEDXXXXXXXXXXXXXXXX 67
+++ +P V ++Y EC +NHAA+ GG+A+DGC EF+ + +
Sbjct: 77 IKKEKPVV------IKYKECLKNHAATMGGNAIDGCGEFMPSGE----------EGSIEA 120
Query: 68 XXXXXXXCHRSFHRR 82
CHR+FHRR
Sbjct: 121 LTCSVCNCHRNFHRR 135
>AT2G18350.1 | chr2:7971122-7971910 REVERSE LENGTH=263
Length = 262
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 22 VRYGECRRNHAASTGGHAVDGCREFIAAEDXXXXXXXXXXXXXXXXXXXXXXXCHRSFHR 81
RY EC++NHAAS+GGH VDGC EF+++ + CHRSFHR
Sbjct: 80 ARYRECQKNHAASSGGHVVDGCGEFMSSGE----------EGTVESLLCAACDCHRSFHR 129
Query: 82 R 82
+
Sbjct: 130 K 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.138 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,698,499
Number of extensions: 37309
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 13
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)