Os09g0413500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L34.
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Os09g0413500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L34.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.58 | 0.408 | 13.1 | -0.0715 | 0.884 | 0.362 | 0.706 | -1.5 | -0.161 | 16.9 | 19.8 | 2796 | -- | -- |
| 78.1 | 0.412 | 13 | 0.141 | 0.886 | 0.735 | 0.809 | -- | -0.0979 | 16.9 | 18.8 | 2734 | -- | -- |
| 76.79 | 0.408 | 13.1 | -0.0839 | 0.89 | 0.367 | -- | -1.55 | -0.161 | 16.8 | 19.7 | 2759 | -- | -- |
| 79.69 | 0.416 | 13 | 0.124 | 0.893 | 0.779 | -- | -- | -0.104 | 16.8 | 18.73 | 2732 | -- | -- |
| 118.21 | 0.506 | 13.1 | -0.0743 | -- | 0.256 | -- | -1.63 | -0.162 | -- | 19.7 | 2892 | -- | -- |
| 86.6 | 0.436 | 13 | 0.492 | 0.861 | -- | 0.893 | -- | 0.0401 | 17 | -- | -- | -- | -- |
| 88.62 | 0.441 | 13 | 0.494 | 0.866 | -- | -- | -- | 0.0446 | 16.9 | -- | -- | -- | -- |
| 120.88 | 0.512 | 13 | 0.178 | -- | 0.736 | -- | -- | -0.0915 | -- | 19 | 1805 | -- | -- |
| 79.98 | 0.417 | 13 | -- | 0.9 | 0.85 | -- | -- | -0.129 | 16.8 | 18.73 | 2734 | -- | -- |
| 128.2 | 0.529 | 13 | 0.462 | -- | -- | -- | -- | 0.0222 | -- | -- | -- | -- | -- |
| 95.06 | 0.456 | 13 | -- | 0.857 | -- | -- | -- | -0.0105 | 16.9 | -- | -- | -- | -- |
| 120.96 | 0.512 | 13 | -- | -- | 0.657 | -- | -- | -0.0981 | -- | 15.3 | 17482 | -- | -- |
| 133.84 | 0.54 | 13 | -- | -- | -- | -- | -- | -0.0291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.91 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 2 | 71.91 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 7 | 72.43 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 9 | 73.07 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 11 | 73.16 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 12 | 73.28 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 13 | 73.31 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 14 | 73.31 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 17 | 73.40 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 29 | 73.73 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 32 | 73.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 53 | 74.21 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 55 | 74.27 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 81 | 74.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 84 | 74.71 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 90 | 74.80 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 117 | 75.11 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 119 | 75.12 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 121 | 75.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 124 | 75.14 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 127 | 75.17 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 130 | 75.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 137 | 75.24 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 166 | 75.36 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 185 | 75.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 196 | 75.52 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 198 | 75.52 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 209 | 75.57 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 214 | 75.57 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 219 | 75.59 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 228 | 75.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 229 | 75.62 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 232 | 75.63 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 233 | 75.63 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 239 | 75.65 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 254 | 75.70 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 289 | 75.79 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 341 | 75.94 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 342 | 75.94 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 358 | 76.00 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 364 | 76.03 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 379 | 76.06 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 395 | 76.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 413 | 76.12 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 419 | 76.13 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 426 | 76.14 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 433 | 76.16 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 437 | 76.17 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 450 | 76.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 463 | 76.21 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 495 | 76.29 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 503 | 76.30 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 522 | 76.30 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 552 | 76.33 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 598 | 76.35 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 606 | 76.35 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 617 | 76.37 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 633 | 76.40 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 673 | 76.44 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 709 | 76.53 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 711 | 76.53 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 712 | 76.53 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 714 | 76.53 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 715 | 76.53 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 717 | 76.53 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 719 | 76.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 721 | 76.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 728 | 76.55 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 731 | 76.55 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 751 | 76.57 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 768 | 76.60 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 6 |
| 772 | 76.60 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 777 | 76.61 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 778 | 76.61 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 784 | 76.63 | wind | 7.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 798 | 76.66 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 816 | 76.67 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 832 | 76.68 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 844 | 76.69 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 847 | 76.69 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 873 | 76.73 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 874 | 76.73 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 879 | 76.73 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 888 | 76.74 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 896 | 76.75 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 898 | 76.75 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 908 | 76.75 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 912 | 76.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 914 | 76.76 | temperature | 15.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 918 | 76.77 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 929 | 76.78 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 941 | 76.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 971 | 76.80 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 972 | 76.80 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 973 | 76.80 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 987 | 76.80 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 17 |