BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0413500 Os09g0413500|AK059470
         (62 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26880.1  | chr1:9315640-9316681 REVERSE LENGTH=121             61   9e-11
AT1G69620.1  | chr1:26189900-26191081 FORWARD LENGTH=120           61   1e-10
AT3G28900.1  | chr3:10902864-10904415 REVERSE LENGTH=121           59   7e-10

>AT1G26880.1 | chr1:9315640-9316681 REVERSE LENGTH=121
          Length = 120

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 35/55 (63%)

Query: 8   SRLSRNRRTVNRPYGGVLSGTAVRERIIRAFXXXXXXXXXXXXXXXXTKDKSASK 62
           SRLSRNRRTVNR YGGVLSG+AVRERIIRAF                 K+K A K
Sbjct: 65  SRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119



>AT1G69620.1 | chr1:26189900-26191081 FORWARD LENGTH=120
          Length = 119

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 35/55 (63%)

Query: 8   SRLSRNRRTVNRPYGGVLSGTAVRERIIRAFXXXXXXXXXXXXXXXXTKDKSASK 62
           SRLSRNRRTVNR YGGVLSG+AVRERIIRAF                 K+K A K
Sbjct: 65  SRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119



>AT3G28900.1 | chr3:10902864-10904415 REVERSE LENGTH=121
          Length = 120

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 34/55 (61%)

Query: 8   SRLSRNRRTVNRPYGGVLSGTAVRERIIRAFXXXXXXXXXXXXXXXXTKDKSASK 62
           SRL+RN RTVNR YGGVLSG AVRERI+RAF                 K+K+A K
Sbjct: 65  SRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPK 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 771,227
Number of extensions: 14688
Number of successful extensions: 19
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 3
Length of query: 62
Length of database: 11,106,569
Length adjustment: 35
Effective length of query: 27
Effective length of database: 10,147,009
Effective search space: 273969243
Effective search space used: 273969243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)