Os09g0413100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0413100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.26 | 0.171 | 11 | -0.256 | 0.522 | -0.983 | -0.218 | 0.725 | -0.25 | 18.4 | 0.24 | 722 | -- | -- |
| 13.41 | 0.171 | 11 | -0.265 | 0.514 | -0.973 | 0.315 | -- | -0.249 | 18.4 | 0.2392 | 724 | -- | -- |
| 13.28 | 0.17 | 11 | -0.261 | 0.524 | -0.985 | -- | 0.486 | -0.251 | 18.4 | 0.24 | 721 | -- | -- |
| 13.64 | 0.172 | 11 | -0.281 | 0.512 | -0.964 | -- | -- | -0.255 | 18.5 | 0.237 | 724 | -- | -- |
| 14.58 | 0.178 | 11 | -0.259 | -- | -0.421 | -- | 0.639 | -0.276 | -- | 1.27 | 2012 | -- | -- |
| 15.64 | 0.185 | 11 | -0.373 | 0.288 | -- | -0.332 | -- | -0.299 | 4.27 | -- | -- | -- | -- |
| 15.95 | 0.187 | 11 | -0.37 | 0.286 | -- | -- | -- | -0.298 | 4.34 | -- | -- | -- | -- |
| 14.69 | 0.179 | 11 | -0.292 | -- | -0.472 | -- | -- | -0.292 | -- | 0.2169 | 2048 | -- | -- |
| 15.4 | 0.183 | 11 | -- | 0.562 | -1.1 | -- | -- | -0.242 | 19 | 0.1854 | 777 | -- | -- |
| 20.36 | 0.211 | 11 | -0.358 | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
| 19.55 | 0.207 | 11 | -- | 0.279 | -- | -- | -- | -0.256 | 4.37 | -- | -- | -- | -- |
| 16.61 | 0.19 | 11 | -- | -- | -0.564 | -- | -- | -0.227 | -- | 0.03986 | 2040 | -- | -- |
| 23.74 | 0.227 | 11 | -- | -- | -- | -- | -- | -0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.60 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 12.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 4 | 12.62 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 10 | 12.65 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 12 | 12.66 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 24 | 12.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 32 | 12.90 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 19 |
| 43 | 12.94 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 16 |
| 62 | 13.00 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 114 | 13.06 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 127 | 13.09 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 132 | 13.11 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 134 | 13.11 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 136 | 13.11 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 140 | 13.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 179 | 13.17 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 4 |
| 180 | 13.17 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 14 |
| 212 | 13.20 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 257 | 13.23 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 275 | 13.25 | humidity | 60 | 720 | > th | dose dependent | sin | 18 | NA |
| 289 | 13.26 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 8 |
| 366 | 13.31 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 399 | 13.32 | humidity | 90 | 720 | < th | dose dependent | sin | 18 | NA |
| 444 | 13.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 507 | 13.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 530 | 13.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 625 | 13.40 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 629 | 13.40 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 13 |
| 682 | 13.42 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 6 |
| 711 | 13.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 740 | 13.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 764 | 13.45 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 880 | 13.48 | radiation | 1 | 90 | > th | dose independent | sin | 20 | NA |
| 903 | 13.49 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 905 | 13.49 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 956 | 13.51 | radiation | 1 | 90 | < th | dose independent | sin | 20 | NA |
| 963 | 13.51 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 10 |
| 980 | 13.51 | radiation | 1 | 30 | < th | dose dependent | sin | 17 | NA |
| 982 | 13.51 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |