BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0413100 Os09g0413100|AK062649
         (159 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47610.1  | chr3:17549178-17551204 FORWARD LENGTH=409          124   2e-29

>AT3G47610.1 | chr3:17549178-17551204 FORWARD LENGTH=409
          Length = 408

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 4/160 (2%)

Query: 2   EGNSWLSSKEKSDLKKQHGEAQEAAEKDKGKVVVTFDLVGRKVILNKDGATVLESEHRIL 61
           E ++WLS++EK  ++K+  E +EA    K KVV+TFDL+GRKV+LN+D  + LES +RIL
Sbjct: 251 ESSTWLSAEEKELVRKKREEIEEAERVKKSKVVMTFDLIGRKVLLNEDDISELESGNRIL 310

Query: 62  GPPEEKDQIHRIQANPTIREQPVFIETGPV--KPKTDRARQSKRLTKNGLCLEVTGRLQH 119
           GPPE K+ ++RI+ NPT R  P+F++ GP   KP +   ++  +  +NGLCLE+TGR+QH
Sbjct: 311 GPPETKN-VNRIKPNPTARLVPIFLDPGPTEKKPNSTTTKKDNKKNRNGLCLEITGRVQH 369

Query: 120 DDKDPQSFLGGKMKKGDHLAYSSFGQPREGDDFDCSQDFD 159
           D  + +         G      + G   E D  +CS D+D
Sbjct: 370 DRSELKYLQADPKSDGKSWPSGNDGLHVE-DGGECSLDYD 408



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,019,874
Number of extensions: 169410
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 107 (45.8 bits)