Os09g0408000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0408000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.05 | 0.278 | 12.3 | 0.644 | 0.339 | 0.485 | 0.291 | 0.893 | 0.395 | 0.142 | 21.25 | 1594 | -- | -- |
| 36.62 | 0.282 | 12.3 | 0.453 | 0.304 | 0.355 | 0.288 | -- | 0.35 | 23.9 | 22.08 | 2721 | -- | -- |
| 35.39 | 0.277 | 12.3 | 0.634 | 0.339 | 0.482 | -- | 0.894 | 0.395 | 0.355 | 21.23 | 1591 | -- | -- |
| 36.91 | 0.283 | 12.3 | 0.415 | 0.322 | 0.376 | -- | -- | 0.326 | 0.2 | 22 | 2814 | -- | -- |
| 40.68 | 0.297 | 12.3 | 0.75 | -- | 0.414 | -- | 1.05 | 0.411 | -- | 24.41 | 2362 | -- | -- |
| 41.3 | 0.301 | 12.3 | 0.602 | 0.339 | -- | 0.269 | -- | 0.459 | 0.128 | -- | -- | -- | -- |
| 41.6 | 0.302 | 12.3 | 0.591 | 0.339 | -- | -- | -- | 0.457 | 0.36 | -- | -- | -- | -- |
| 41.62 | 0.3 | 12.3 | 0.435 | -- | 0.517 | -- | -- | 0.331 | -- | 24.79 | 2419 | -- | -- |
| 39.37 | 0.292 | 12.4 | -- | 0.315 | 0.502 | -- | -- | 0.22 | 0.409 | 20.8 | 47520 | -- | -- |
| 48.82 | 0.326 | 12.3 | 0.603 | -- | -- | -- | -- | 0.463 | -- | -- | -- | -- | -- |
| 50.81 | 0.333 | 12.3 | -- | 0.348 | -- | -- | -- | 0.392 | 0.449 | -- | -- | -- | -- |
| 46.05 | 0.316 | 12.4 | -- | -- | 0.523 | -- | -- | 0.225 | -- | 21.08 | 47520 | -- | -- |
| 58.4 | 0.357 | 12.3 | -- | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 2 | 34.84 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 4 | 34.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 10 | 34.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 12 | 34.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 14 | 34.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 46 | 35.10 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 62 | 35.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 90 | 35.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 120 | 35.42 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 122 | 35.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 134 | 35.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 147 | 35.49 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 170 | 35.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 185 | 35.54 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 203 | 35.55 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 225 | 35.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 244 | 35.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 260 | 35.59 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 264 | 35.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 278 | 35.60 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 12 |
| 311 | 35.62 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 377 | 35.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 392 | 35.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 431 | 35.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 479 | 35.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 504 | 35.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 520 | 35.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 580 | 35.72 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 629 | 35.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 636 | 35.73 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 15 |
| 694 | 35.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 768 | 35.75 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 839 | 35.77 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 7 |
| 848 | 35.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 886 | 35.78 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 910 | 35.78 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 946 | 35.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |