BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0408000 Os09g0408000|AK059658
         (417 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50590.1  | chr3:18771292-18779220 FORWARD LENGTH=1615         433   e-122

>AT3G50590.1 | chr3:18771292-18779220 FORWARD LENGTH=1615
          Length = 1614

 Score =  433 bits (1114), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/379 (61%), Positives = 264/379 (69%), Gaps = 23/379 (6%)

Query: 48   AGPIPEDFFQNTIPSQQLAARLPPPGIILSRIAQPAPGMSAVRPVHNQ---NMMANVGLP 104
            A PIPEDFFQNTIPS ++A  LPPPG  LS++ Q A    A +   NQ     + ++GLP
Sbjct: 1250 AAPIPEDFFQNTIPSVEVAKTLPPPGTYLSKMDQAARAAIAAQGGPNQANNTPLPDIGLP 1309

Query: 105  DGGVXXXXXXXXXXXXXXXXXXXDPISLPDGGVXXXXXXXXXXXXXXXXXXHGFQPAIPA 164
            DGGV                     + LPDGGV                        +P 
Sbjct: 1310 DGGVPQQYPQQTSQQPGAPFQT---VGLPDGGVRQQYPGQNQVPSQ-----------VPV 1355

Query: 165  MSQPIDLSALEGPGQGKQXXX----XXXXXXXXXGQVPRGAPAAECYKMGLAHLEQNQLT 220
             +QP+DLS L  P  G                  GQVPRGA A  C+K GLAHLEQNQL 
Sbjct: 1356 STQPLDLSVLGVPNTGDSGKPPGQPQSPPASVRPGQVPRGAAAPVCFKTGLAHLEQNQLP 1415

Query: 221  DALSCLDEAFLALAKDQSREADIKAQATICAQYKIAVALLQEIARLQRVQGAGALSAKEE 280
            DALSC DEAFLALAKDQSR ADIKAQATICAQYKIAV LL+EI RLQRVQGA ALSAK+E
Sbjct: 1416 DALSCFDEAFLALAKDQSRGADIKAQATICAQYKIAVTLLREILRLQRVQGASALSAKDE 1475

Query: 281  MARLSRHLASLPIQAKHRINCIRTAIKRNMEVQNFAYAKQMLDLLYSKAPPSKQDELKSL 340
            MARLSRHLASLP+ AKHRINCIRTAIKRNMEVQN+ Y+KQML+LL SKAP SKQ+EL+ L
Sbjct: 1476 MARLSRHLASLPLLAKHRINCIRTAIKRNMEVQNYGYSKQMLELLLSKAPASKQEELRGL 1535

Query: 341  IDMCVQRGLTNKSIDPFEDPSQFCAVTLSRLSTIGHDVCDLCGAKFSALSAPGCVICGMG 400
            +D+CVQRG +NKSIDP EDPSQ C+ TLSRLSTIG+DVCDLCGAKF+ALS+PGC+ICGMG
Sbjct: 1536 VDLCVQRGTSNKSIDPLEDPSQLCSATLSRLSTIGYDVCDLCGAKFAALSSPGCIICGMG 1595

Query: 401  SIKRSDALAGPVP--SPFG 417
            SIKRSDALAGP P  +PFG
Sbjct: 1596 SIKRSDALAGPAPVSTPFG 1614



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,365,664
Number of extensions: 273078
Number of successful extensions: 661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,337,553
Effective search space: 2634666748
Effective search space used: 2634666748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)