Os09g0402100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PF1 protein.
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Os09g0402100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PF1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.11 | 0.231 | 13.1 | 0.912 | 0.763 | 0.747 | -0.339 | 0.459 | 0.217 | 20.1 | 20.94 | 1024 | -- | -- |
| 24.68 | 0.231 | 13.1 | 0.839 | 0.742 | 0.717 | -0.215 | -- | 0.206 | 20.2 | 20.9 | 999 | -- | -- |
| 24.44 | 0.23 | 13.1 | 0.915 | 0.77 | 0.749 | -- | 0.434 | 0.215 | 20.1 | 21 | 1060 | -- | -- |
| 24.74 | 0.232 | 13.1 | 0.83 | 0.758 | 0.691 | -- | -- | 0.189 | 20.1 | 21.2 | 996 | -- | -- |
| 52.83 | 0.339 | 13.1 | 0.896 | -- | 0.846 | -- | 0.366 | 0.162 | -- | 21.29 | 794 | -- | -- |
| 38.98 | 0.293 | 13.1 | 1.1 | 0.824 | -- | -0.256 | -- | 0.373 | 20.5 | -- | -- | -- | -- |
| 39.19 | 0.293 | 13.1 | 1.1 | 0.824 | -- | -- | -- | 0.373 | 20.4 | -- | -- | -- | -- |
| 53.04 | 0.339 | 13.1 | 0.802 | -- | 0.816 | -- | -- | 0.14 | -- | 21.4 | 794 | -- | -- |
| 37.19 | 0.284 | 13.1 | -- | 0.761 | 0.92 | -- | -- | 0.101 | 20.2 | 20.7 | 8092 | -- | -- |
| 77.12 | 0.41 | 13.1 | 1.1 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 71.3 | 0.395 | 13.1 | -- | 0.82 | -- | -- | -- | 0.25 | 20.5 | -- | -- | -- | -- |
| 69.28 | 0.388 | 13.2 | -- | -- | 0.862 | -- | -- | 0.00648 | -- | 21.6 | 866 | -- | -- |
| 109.02 | 0.487 | 13.1 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 21 | 24.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 22 | 24.91 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 23 | 24.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 27 | 24.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 46 | 25.00 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 54 | 25.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 62 | 25.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 73 | 25.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 95 | 25.12 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 115 | 25.20 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 129 | 25.24 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 170 | 25.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 177 | 25.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 186 | 25.41 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 187 | 25.41 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 197 | 25.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 213 | 25.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 227 | 25.51 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 258 | 25.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 282 | 25.64 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 295 | 25.68 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 15 |
| 412 | 25.86 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 428 | 25.87 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 438 | 25.88 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 6 |
| 469 | 25.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 478 | 25.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 547 | 25.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 548 | 25.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 560 | 25.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 603 | 26.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 671 | 26.06 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 22 |
| 686 | 26.07 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 726 | 26.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 730 | 26.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 828 | 26.15 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 931 | 26.21 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 994 | 26.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |