BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0402100 Os09g0402100|AK068506
(213 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14900.1 | chr1:5138665-5139353 REVERSE LENGTH=205 82 2e-16
AT3G18035.1 | chr3:6169384-6171558 REVERSE LENGTH=481 59 1e-09
AT1G48620.1 | chr1:17974148-17976301 REVERSE LENGTH=480 57 9e-09
>AT1G14900.1 | chr1:5138665-5139353 REVERSE LENGTH=205
Length = 204
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 25 YPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSK 84
YP+MI+ AIE+L+D+NG NKT I++HIE + LPP+H +LL+ HL +MK+TG+L K
Sbjct: 26 YPQMIMEAIESLNDKNGCNKTTIAKHIESTQQ-TLPPSHMTLLSYHLNQMKKTGQLIMVK 84
Query: 85 NNYFRGD 91
NNY + D
Sbjct: 85 NNYMKPD 91
>AT3G18035.1 | chr3:6169384-6171558 REVERSE LENGTH=481
Length = 480
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 25 YPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSK 84
Y EMI AAI AL++ +GS+K AIS++IE Y GL AH +LLT HL +K +G L+ K
Sbjct: 68 YSEMICAAIAALNEPDGSSKMAISRYIERCYTGLT-SAHAALLTHHLKTLKTSGVLSMVK 126
Query: 85 NNY 87
+Y
Sbjct: 127 KSY 129
>AT1G48620.1 | chr1:17974148-17976301 REVERSE LENGTH=480
Length = 479
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 25 YPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTGELAFSK 84
Y +MI AI AL++ +GS+K AIS++IE Y G +P AH +LLT HL +K +G L K
Sbjct: 78 YSDMICTAIAALNEPDGSSKQAISRYIERIYTG-IPTAHGALLTHHLKTLKTSGILVMVK 136
Query: 85 NNY 87
+Y
Sbjct: 137 KSY 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,472,187
Number of extensions: 64966
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 109 (46.6 bits)