Os09g0401900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0401900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.98 | 0.564 | 6.12 | -1.19 | 1.25 | 1.51 | 0.595 | -2 | -0.471 | 19.5 | 25 | 96 | -- | -- |
| 145.56 | 0.562 | 6.09 | -0.966 | 1.25 | 1.36 | 0.507 | -- | -0.426 | 19.5 | 24.9 | 95 | -- | -- |
| 144.93 | 0.561 | 6.12 | -1.19 | 1.24 | 1.53 | -- | -1.85 | -0.466 | 19.5 | 25.03 | 95 | -- | -- |
| 146.27 | 0.563 | 6.09 | -0.968 | 1.25 | 1.36 | -- | -- | -0.409 | 19.5 | 24.95 | 95 | -- | -- |
| 188.64 | 0.64 | 6.11 | -1.42 | -- | 2.24 | -- | -2.1 | -0.583 | -- | 24.66 | 393 | -- | -- |
| 174 | 0.618 | 6.07 | -0.732 | 1.63 | -- | 1.01 | -- | -0.302 | 18.3 | -- | -- | -- | -- |
| 176.51 | 0.622 | 6.07 | -0.745 | 1.63 | -- | -- | -- | -0.298 | 18.3 | -- | -- | -- | -- |
| 191.93 | 0.645 | 6.08 | -1.13 | -- | 2.05 | -- | -- | -0.509 | -- | 24.6 | 389 | -- | -- |
| 169.93 | 0.607 | 6.06 | -- | 1.32 | 1.12 | -- | -- | -0.278 | 19.1 | 25.1 | 95 | -- | -- |
| 314.8 | 0.829 | 6.04 | -0.788 | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
| 191.13 | 0.647 | 6.05 | -- | 1.64 | -- | -- | -- | -0.215 | 18.3 | -- | -- | -- | -- |
| 224.41 | 0.698 | 6.04 | -- | -- | 1.9 | -- | -- | -0.36 | -- | 24.8 | 384 | -- | -- |
| 331.17 | 0.849 | 6.02 | -- | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.22 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 2 | 140.85 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 9 | 142.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 49 | 143.15 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 50 | 143.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 56 | 143.48 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 73 | 143.80 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 85 | 143.91 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 22 |
| 100 | 144.01 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 109 | 144.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 132 | 144.30 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 144 | 144.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 161 | 144.71 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 163 | 144.81 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 164 | 144.82 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 178 | 145.19 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 191 | 145.36 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 247 | 145.65 | temperature | 25.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 388 | 146.44 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 389 | 146.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 391 | 146.48 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 393 | 146.50 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 394 | 146.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 414 | 146.69 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 425 | 146.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 426 | 146.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 427 | 146.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 436 | 146.82 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 443 | 146.86 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 454 | 146.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 457 | 146.95 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 459 | 146.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 468 | 147.00 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 483 | 147.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 541 | 147.31 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 564 | 147.38 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 606 | 147.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 646 | 147.67 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 648 | 147.67 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 752 | 147.91 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 766 | 147.93 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 784 | 147.96 | humidity | 70.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 792 | 147.97 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 808 | 148.00 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 809 | 148.00 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 814 | 148.01 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 849 | 148.07 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 859 | 148.09 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 866 | 148.09 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 928 | 148.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 935 | 148.19 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 937 | 148.19 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 941 | 148.20 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 950 | 148.21 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 980 | 148.25 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 994 | 148.26 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 19 | 4 |