BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0401900 Os09g0401900|AK106516
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48720.2  | chr5:19759233-19761621 FORWARD LENGTH=301           97   7e-21
AT2G01990.1  | chr2:465197-466497 REVERSE LENGTH=214               62   3e-10
AT1G14630.1  | chr1:5019995-5021445 FORWARD LENGTH=227             57   2e-08

>AT5G48720.2 | chr5:19759233-19761621 FORWARD LENGTH=301
          Length = 300

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 7/88 (7%)

Query: 214 SLVKAKQNLTTTIAYPFTLIKPSWEEGDVITLKDINQRIRAPPKKA------PETLGTSA 267
           S  +    L ++I YPF  IKP    G  +TLKDINQ+IR PP K       P  + TSA
Sbjct: 214 SFSRPVSKLPSSIIYPFAFIKPCGVHGG-MTLKDINQKIRNPPAKPKAHIEEPAVIQTSA 272

Query: 268 FSGKPVVGKTRIRTDGGRGSITILRTKG 295
           FSGKPVVGKT+IRT+GG+GSITI+RT+G
Sbjct: 273 FSGKPVVGKTKIRTEGGKGSITIMRTRG 300



>AT2G01990.1 | chr2:465197-466497 REVERSE LENGTH=214
          Length = 213

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 14/88 (15%)

Query: 220 QNLTTTIAYPFTLIKPSWEEGDVITLKDINQRI-RAPPKKAPETLGTSA----------- 267
           + L T + YPF L+KP   E DV TL DIN+RI  AP +     +G  A           
Sbjct: 128 KRLITKLVYPFGLVKPGGRENDV-TLNDINERILMAPSRPIRHPVGDFASRPCVSGRGPG 186

Query: 268 FSGKPVVGKTRIRTDGGRGSITILRTKG 295
            SGK VV  T+I+T  GRG+ITI+RTKG
Sbjct: 187 LSGKAVVALTKIQTQ-GRGTITIIRTKG 213



>AT1G14630.1 | chr1:5019995-5021445 FORWARD LENGTH=227
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 14/82 (17%)

Query: 226 IAYPFTLIKPSWEEGDVITLKDINQRIRAP---PKKAPE---------TLGTSAFSGKPV 273
           + YPF ++KP   E D ITL DIN+RI  P   P + P          +      SGK V
Sbjct: 147 VVYPFGVVKPGGREED-ITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAV 205

Query: 274 VGKTRIRTDGGRGSITILRTKG 295
           V  T+I+T  GRG+ITI+RTKG
Sbjct: 206 VAFTKIQT-LGRGTITIIRTKG 226



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.125    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,191,561
Number of extensions: 241535
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)