Os09g0396900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF125, transmembrane family protein.
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Os09g0396900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF125, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 717.52 | 1.26 | 10.7 | -0.0244 | 10 | 9.03 | 1.62 | -2.33 | 0.886 | 8.76 | 0.27 | 752 | 10.9 | 19.2 |
| 714.89 | 1.25 | 10.7 | 0.136 | 10.4 | 9.4 | 3.6 | -- | 0.9 | 8.71 | 0.2996 | 745 | 10.8 | 19.1 |
| 719.65 | 1.25 | 10.7 | 0.146 | 10.1 | 9.01 | -- | -3.25 | 0.925 | 8.79 | 0.31 | 748 | 10.9 | 19.1 |
| 757.08 | 1.28 | 10.7 | 0.237 | 10.5 | 9.52 | -- | -- | 0.897 | 8.68 | 0.27 | 744 | 10.7 | 19.1 |
| 1201.55 | 1.62 | 10.9 | 1.03 | -- | 0.985 | -- | 0.641 | 1.38 | -- | 0.31 | 748 | 10.9 | 19.1 |
| 1066.39 | 1.53 | 10.9 | 1.01 | 1.95 | -- | 1.69 | -- | 1.32 | 10.1 | -- | -- | -- | -- |
| 1077.75 | 1.54 | 10.9 | 1.08 | 1.94 | -- | -- | -- | 1.32 | 10.1 | -- | -- | -- | -- |
| 1107.26 | 1.55 | 11 | 1.73 | -- | -2.39 | -- | -- | 1.53 | -- | 40.32 | 47520 | 11.5 | 18.5 |
| 758.27 | 1.28 | 10.7 | -- | 10.6 | 9.71 | -- | -- | 0.868 | 8.67 | 0.2642 | 745 | 10.7 | 19.2 |
| 1305.21 | 1.69 | 10.9 | 1.05 | -- | -- | -- | -- | 1.32 | -- | -- | -- | -- | -- |
| 1108.47 | 1.56 | 10.9 | -- | 1.93 | -- | -- | -- | 1.2 | 10.1 | -- | -- | -- | -- |
| 1050.28 | 1.51 | 10.9 | -- | -- | -3.16 | -- | -- | 1.24 | -- | 33.02 | 45619 | 11.6 | 19.1 |
| 1334.46 | 1.71 | 10.9 | -- | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 693.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 2 | 693.34 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 8 | 701.47 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 9 | 703.58 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 13 | 707.43 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 17 | 709.54 | wind | 7 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 22 | 713.49 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 23 | 713.50 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 40 | 722.42 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 42 | 723.48 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 47 | 724.59 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 57 | 728.55 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 60 | 728.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 136 | 748.90 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 145 | 751.39 | wind | 7 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 188 | 757.75 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 193 | 757.91 | humidity | 80 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 244 | 764.53 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 283 | 769.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 292 | 771.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 312 | 772.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 349 | 775.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 399 | 781.94 | wind | 7 | 14400 | > th | dose dependent | sin | 0 | NA |
| 405 | 782.75 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 423 | 784.36 | wind | 7 | 14400 | > th | dose independent | sin | 0 | NA |
| 477 | 788.43 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 478 | 788.47 | wind | 7 | 14400 | < th | dose independent | sin | 0 | NA |
| 488 | 789.13 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 549 | 793.65 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 555 | 794.20 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 573 | 795.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 604 | 797.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 629 | 798.59 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 630 | 798.60 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 675 | 800.89 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 676 | 800.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 678 | 800.95 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 694 | 801.71 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 757 | 805.09 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 764 | 805.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 772 | 805.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 832 | 808.01 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |