Os09g0396300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C15, pyroglutamyl peptidase I family protein.
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Os09g0396300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C15, pyroglutamyl peptidase I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.96 | 0.248 | 13 | -1.2 | 0.509 | -0.817 | -0.132 | 0.815 | -0.0995 | 1.66 | 22.89 | 1499 | -- | -- |
| 28.51 | 0.249 | 13 | -1.12 | 0.485 | -1.02 | -0.16 | -- | -0.0945 | 1.56 | 22.71 | 1401 | -- | -- |
| 27.97 | 0.246 | 13 | -1.19 | 0.498 | -0.833 | -- | 0.795 | -0.0929 | 1.66 | 22.66 | 1406 | -- | -- |
| 28.48 | 0.249 | 13 | -1.1 | 0.491 | -1.01 | -- | -- | -0.0732 | 1.68 | 22.35 | 1367 | -- | -- |
| 40.41 | 0.296 | 13 | -1.16 | -- | -0.959 | -- | 0.551 | -0.097 | -- | 22.9 | 994 | -- | -- |
| 38.09 | 0.289 | 13 | -0.825 | 0.521 | -- | -0.149 | -- | 0.0696 | 1.77 | -- | -- | -- | -- |
| 38.18 | 0.289 | 13 | -0.821 | 0.521 | -- | -- | -- | 0.0705 | 1.75 | -- | -- | -- | -- |
| 40.76 | 0.297 | 13 | -1.09 | -- | -1.07 | -- | -- | -0.0841 | -- | 22.77 | 997 | -- | -- |
| 53.81 | 0.344 | 13 | -- | 0.56 | -0.422 | -- | -- | 0.123 | 1.62 | 22.35 | 1367 | -- | -- |
| 54.66 | 0.345 | 13 | -0.799 | -- | -- | -- | -- | 0.0822 | -- | -- | -- | -- | -- |
| 55.93 | 0.35 | 12.9 | -- | 0.506 | -- | -- | -- | 0.162 | 1.7 | -- | -- | -- | -- |
| 67.74 | 0.383 | 13 | -- | -- | -0.457 | -- | -- | 0.0867 | -- | 25.3 | 916 | -- | -- |
| 71.52 | 0.395 | 12.9 | -- | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.42 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 4 | 27.54 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 10 | 27.65 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 11 | 27.65 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 14 | 27.69 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 26 | 27.86 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 30 | 27.90 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 40 | 28.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 44 | 28.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 49 | 28.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 16 |
| 56 | 28.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 59 | 28.11 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 60 | 28.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 70 | 28.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 75 | 28.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 79 | 28.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 84 | 28.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 85 | 28.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 112 | 28.17 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 135 | 28.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 158 | 28.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 166 | 28.24 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 173 | 28.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 183 | 28.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 187 | 28.26 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 188 | 28.26 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 199 | 28.27 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 221 | 28.28 | temperature | 20 | 1440 | < th | dose dependent | sin | 8 | NA |
| 246 | 28.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 273 | 28.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 277 | 28.33 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 305 | 28.35 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 319 | 28.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 21 |
| 335 | 28.37 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 340 | 28.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 10 |
| 347 | 28.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 373 | 28.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 379 | 28.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 416 | 28.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 422 | 28.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 450 | 28.45 | wind | 9 | 43200 | > th | dose independent | sin | 2 | NA |
| 480 | 28.47 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 491 | 28.47 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 497 | 28.48 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 537 | 28.49 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 547 | 28.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 548 | 28.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 556 | 28.50 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 570 | 28.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 579 | 28.51 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 624 | 28.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 645 | 28.53 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 652 | 28.54 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 668 | 28.55 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 680 | 28.56 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 689 | 28.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 692 | 28.56 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 718 | 28.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 720 | 28.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 840 | 28.64 | wind | 9 | 43200 | < th | dose independent | sin | 2 | NA |
| 867 | 28.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 887 | 28.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 893 | 28.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 939 | 28.68 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 951 | 28.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |