BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0396300 Os09g0396300|AK060069
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56700.1 | chr1:21256743-21257640 FORWARD LENGTH=220 324 3e-89
AT1G23440.1 | chr1:8321940-8324019 FORWARD LENGTH=218 309 7e-85
>AT1G56700.1 | chr1:21256743-21257640 FORWARD LENGTH=220
Length = 219
Score = 324 bits (830), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 148/216 (68%), Positives = 180/216 (83%), Gaps = 1/216 (0%)
Query: 1 MGSEGPSVVTVHVTGFKKFHGVAENPTEKIVTNLKSFVEKKGLPKNLVLGSCTVLETAGQ 60
MGSEGP+ VT+H+TGFKKFHGVAENPTEK+ NLK ++ K + K++ LGSCTVLETAGQ
Sbjct: 1 MGSEGPTGVTIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETAGQ 60
Query: 61 GALGTLYKVLESSIAERENGSSAQGQVIWIHFGVNSGATRFALENQAVNEATFRCPDELG 120
GAL +LY++L+S++ +E+ S G+ IW+HFGVNSGAT+FA+E QAVNEATFRCPDELG
Sbjct: 61 GALASLYQLLQSAVNTKES-ESLTGKTIWVHFGVNSGATKFAIEQQAVNEATFRCPDELG 119
Query: 121 WKPQRAPIVPSDGGISRTRETTLPVNELTKSLRKTGYDVMPSDDAGRFVCNYVYYHSLRF 180
WKPQ PIVPSDG IS R+T LPV E+TK+L K G++V+ SDDAGRFVCNYVYYHSLRF
Sbjct: 120 WKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSLRF 179
Query: 181 AEQHGIKSLFVHVPLFLTIDEEVQMHFVASLLEALS 216
AEQ+ +SLFVHVPLF+ +DEE QM F SLLE L+
Sbjct: 180 AEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLA 215
>AT1G23440.1 | chr1:8321940-8324019 FORWARD LENGTH=218
Length = 217
Score = 309 bits (792), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 144/216 (66%), Positives = 174/216 (80%), Gaps = 2/216 (0%)
Query: 1 MGSEGPSVVTVHVTGFKKFHGVAENPTEKIVTNLKSFVEKKGLPKNLVLGSCTVLETAGQ 60
MGSEGP +T+HVTGFKKF GV+ENPTEKI LKS+VEK+GLP L LGSC+VL+TAG+
Sbjct: 1 MGSEGPKAITIHVTGFKKFLGVSENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDTAGE 60
Query: 61 GALGTLYKVLESSIAERENGSSAQGQVIWIHFGVNSGATRFALENQAVNEATFRCPDELG 120
GA LY+VLESS+ + ++ G V+W+H GVNSGAT+FA+E QAVNEA FRCPDELG
Sbjct: 61 GAKSKLYEVLESSVVSGDKNNN--GTVVWLHLGVNSGATKFAIERQAVNEAHFRCPDELG 118
Query: 121 WKPQRAPIVPSDGGISRTRETTLPVNELTKSLRKTGYDVMPSDDAGRFVCNYVYYHSLRF 180
W+PQR PIV DGGIS+ +ET+ + + L+K G++V+ SDDAGRFVCNYVYYHSLRF
Sbjct: 119 WQPQRLPIVVEDGGISKAKETSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYHSLRF 178
Query: 181 AEQHGIKSLFVHVPLFLTIDEEVQMHFVASLLEALS 216
AEQ G KSLFVHVPLF IDE+ QM FVASLLEA++
Sbjct: 179 AEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIA 214
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,594,234
Number of extensions: 186187
Number of successful extensions: 472
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)