Os09g0391500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyruvate kinase family protein.
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Os09g0391500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyruvate kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 553.87 | 1.11 | 4.35 | -3.2 | 0.143 | 1.31 | -2.81 | -2.34 | -1.56 | 19.2 | 10.11 | 1361 | -- | -- |
| 562.8 | 1.1 | 4.33 | -2.84 | 0.163 | 1.25 | -2.81 | -- | -1.47 | 19.3 | 10.09 | 1358 | -- | -- |
| 574.55 | 1.12 | 4.36 | -3.18 | 0.122 | 1.31 | -- | -2.73 | -1.57 | 18.8 | 10.22 | 1347 | -- | -- |
| 586.43 | 1.13 | 4.32 | -2.77 | 0.132 | 1.24 | -- | -- | -1.47 | 19.7 | 10.22 | 1363 | -- | -- |
| 575.02 | 1.12 | 4.36 | -3.18 | -- | 1.3 | -- | -2.82 | -1.58 | -- | 10.32 | 1326 | -- | -- |
| 606.56 | 1.15 | 4.21 | -2.46 | 0.24 | -- | -2.84 | -- | -1.06 | 19.5 | -- | -- | -- | -- |
| 626.45 | 1.17 | 4.22 | -2.4 | 0.302 | -- | -- | -- | -1.07 | 22.4 | -- | -- | -- | -- |
| 587.37 | 1.13 | 4.32 | -2.78 | -- | 1.26 | -- | -- | -1.46 | -- | 10.09 | 1360 | -- | -- |
| 736.75 | 1.26 | 4.18 | -- | 0.359 | 1.15 | -- | -- | -0.792 | 20.3 | 29.99 | 4328 | -- | -- |
| 632.02 | 1.17 | 4.21 | -2.4 | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
| 778.65 | 1.31 | 4.16 | -- | 0.292 | -- | -- | -- | -0.799 | 21.8 | -- | -- | -- | -- |
| 730.38 | 1.26 | 4.16 | -- | -- | 1.37 | -- | -- | -0.852 | -- | 20 | 3703 | -- | -- |
| 783.74 | 1.31 | 4.15 | -- | -- | -- | -- | -- | -0.799 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 544.10 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 3 | 546.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 6 | 549.78 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 7 | 550.22 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 44 | 552.81 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 49 | 553.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 51 | 553.90 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 56 | 554.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 58 | 554.33 | radiation | 10 | 1440 | > th | dose independent | sin | 0 | NA |
| 62 | 554.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 68 | 554.75 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 70 | 554.79 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 71 | 554.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 80 | 555.17 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 81 | 555.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 101 | 555.53 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 169 | 556.35 | wind | 1 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 170 | 556.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 173 | 556.45 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 216 | 556.83 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 219 | 556.98 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 224 | 556.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 229 | 557.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 235 | 557.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 253 | 557.21 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 329 | 557.34 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 348 | 557.53 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 367 | 558.11 | wind | 1 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 373 | 558.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 375 | 558.22 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 9 |
| 421 | 559.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 429 | 559.41 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 433 | 559.54 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 19 |
| 446 | 559.65 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 461 | 559.90 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 16 |
| 466 | 559.93 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 479 | 560.08 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 513 | 560.29 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 519 | 560.43 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 521 | 560.48 | radiation | 20 | 1440 | < th | dose dependent | sin | 21 | NA |
| 556 | 560.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 561 | 560.82 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 8 | 10 |
| 564 | 560.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 565 | 560.88 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 581 | 560.93 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 582 | 560.94 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 592 | 561.03 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 612 | 561.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 616 | 561.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 636 | 561.29 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 10 |
| 659 | 561.36 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 662 | 561.39 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 668 | 561.49 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 1 |
| 670 | 561.50 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 14 |
| 683 | 561.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 705 | 561.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 727 | 561.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 740 | 561.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 744 | 561.84 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 772 | 562.01 | humidity | 70 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 778 | 562.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 793 | 562.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 809 | 562.35 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 15 |
| 813 | 562.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 971 | 562.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 988 | 562.86 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 14 |