BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0391500 Os09g0391500|Os09g0391500
         (74 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36580.1  | chr2:15339253-15342781 FORWARD LENGTH=528           77   2e-15
AT3G52990.1  | chr3:19649046-19652237 FORWARD LENGTH=528           74   1e-14

>AT2G36580.1 | chr2:15339253-15342781 FORWARD LENGTH=528
          Length = 527

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 43/46 (93%)

Query: 3   DAEYHQETLEILKLAIKSTKKLWAVMLDTVGPELQVVNKSKASISL 48
           DA+YHQETLE LK+A+KSTKKL AVMLDTVGPELQV+NK++ +ISL
Sbjct: 65  DADYHQETLENLKIAVKSTKKLCAVMLDTVGPELQVINKTEKAISL 110



>AT3G52990.1 | chr3:19649046-19652237 FORWARD LENGTH=528
          Length = 527

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 43/47 (91%)

Query: 2   SDAEYHQETLEILKLAIKSTKKLWAVMLDTVGPELQVVNKSKASISL 48
            DA+YHQETL+ LK+A++STKKL AVMLDTVGPELQV+NKS+ +I+L
Sbjct: 64  GDADYHQETLDNLKVAVRSTKKLCAVMLDTVGPELQVINKSEKAITL 110



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,427,411
Number of extensions: 38340
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 74
Length of database: 11,106,569
Length adjustment: 46
Effective length of query: 28
Effective length of database: 9,845,433
Effective search space: 275672124
Effective search space used: 275672124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)