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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0380000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acetyl-CoA synthetase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.38 (0.0383) R2 : 0.81
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.13 (0.0997) R2dC : 0.725 R2C : 0.74
β3 : -2.04 (0.164) R2dE : 0.0687 R2E : 0.0813
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.388 (0.0823) R2dN8 : 0.0128 R2N8 : -0.00848
σ : 0.715
deviance : 235.55
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_____
C
peak time of C : 17.4
E
wheather : humidity
threshold : 79.99
memory length : 1330
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 20.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.11 0.684 6.34 0.00609 4.15 -2.52 1.99 4.13 0.428 17.4 79.99 1340 21.8 --
221.75 0.694 6.41 -0.408 4.11 -1.94 1.78 -- 0.308 17.3 80 1345 20.2 --
221.93 0.694 6.34 -0.0141 4.17 -2.52 -- 3.99 0.428 17.4 80 1335 21.8 --
230.44 0.707 6.38 -0.456 4.12 -1.88 -- -- 0.349 17.4 79.41 1323 19.8 --
1116.82 1.56 6.34 -0.097 -- -3.06 -- 4.16 0.31 -- 79 1375 22 --
286.18 0.793 6.45 -0.735 4.18 -- 2.03 -- 0.0727 17.1 -- -- -- --
296.63 0.807 6.44 -0.734 4.19 -- -- -- 0.0824 17.1 -- -- -- --
768.63 1.3 6.44 -0.682 -- 2.69 -- -- -0.24 -- 85.42 1171 11.6 --
235.55 0.715 6.38 -- 4.13 -2.04 -- -- 0.388 17.4 79.99 1330 20.3 --
1215.8 1.63 6.39 -0.882 -- -- -- -- -0.0237 -- -- -- -- --
310.82 0.825 6.42 -- 4.2 -- -- -- 0.164 17.1 -- -- -- --
780.85 1.31 6.43 -- -- 2.71 -- -- -0.167 -- 85.42 1171 11.6 --
1236.34 1.64 6.37 -- -- -- -- -- 0.0742 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.81 humidity 80 1440 < th dose independent rect. 7 7
5 217.56 humidity 80 1440 < th dose independent rect. 2 12
20 221.56 humidity 80 1440 > th dose independent rect. 2 12
26 222.09 humidity 80 1440 > th dose independent rect. 6 8
27 222.11 humidity 80 1440 < th dose independent sin 4 NA
65 225.09 humidity 80 1440 > th dose independent sin 3 NA
158 232.52 humidity 70 1440 > th dose dependent rect. 9 5
160 232.57 humidity 80 1440 > th dose independent rect. 11 3
161 232.57 humidity 80 1440 > th dose dependent rect. 11 3
163 232.76 humidity 90 720 < th dose dependent rect. 20 1
164 232.82 radiation 10 1440 > th dose independent rect. 8 5
168 233.08 radiation 10 1440 > th dose independent rect. 6 10
182 233.23 radiation 10 1440 > th dose independent rect. 6 8
196 233.30 humidity 60 1440 > th dose dependent rect. 11 2
215 233.51 humidity 60 14400 < th dose dependent rect. 16 1
217 233.56 radiation 10 1440 > th dose independent sin 3 NA
241 234.15 humidity 80 1440 < th dose independent rect. 11 3
253 234.41 radiation 10 1440 > th dose independent rect. 15 23
263 234.63 humidity 70 10 > th dose dependent rect. 7 21
303 235.26 radiation 10 1440 > th dose independent rect. 11 23
307 235.36 radiation 1 1440 < th dose independent rect. 8 4
308 235.36 radiation 1 1440 < th dose dependent rect. 8 4
319 235.58 radiation 10 1440 > th dose independent rect. 8 23
341 235.80 radiation 10 1440 > th dose independent no NA NA
434 236.48 radiation 1 1440 < th dose independent rect. 9 2
435 236.48 radiation 1 1440 < th dose dependent rect. 9 2
436 236.50 radiation 1 1440 < th dose independent rect. 8 22
466 236.90 radiation 1 1440 > th dose independent rect. 11 19
533 237.72 radiation 10 1440 < th dose dependent rect. 9 8
566 238.40 humidity 70 14400 < th dose independent rect. 18 13
579 238.65 humidity 70 14400 < th dose independent rect. 18 4
610 239.04 humidity 70 14400 > th dose independent rect. 18 13
613 239.06 radiation 1 1440 < th dose dependent rect. 5 12
616 239.09 humidity 70 14400 > th dose independent rect. 18 10
618 239.10 humidity 70 14400 > th dose independent rect. 18 5
628 239.12 humidity 70 14400 < th dose dependent rect. 16 15
631 239.16 radiation 1 1440 < th dose dependent rect. 23 18
635 239.19 humidity 70 14400 < th dose dependent rect. 16 6
648 239.22 radiation 1 1440 < th dose dependent rect. 19 22
655 239.30 humidity 90 1440 < th dose dependent rect. 2 13
660 239.39 radiation 1 1440 < th dose dependent rect. 2 15
720 239.85 humidity 90 1440 < th dose dependent rect. 11 2
734 239.92 humidity 70 720 > th dose dependent rect. 7 17
736 239.94 humidity 60 1440 > th dose dependent sin 1 NA
758 240.12 radiation 1 1440 < th dose independent sin 23 NA
762 240.14 radiation 10 1440 < th dose dependent rect. 8 20
775 240.16 radiation 10 1440 < th dose dependent rect. 8 17
842 240.38 humidity 90 1440 < th dose dependent rect. 9 5
845 240.40 humidity 90 1440 < th dose dependent sin 2 NA
855 240.44 humidity 60 14400 > th dose independent rect. 17 1
874 240.51 radiation 1 1440 < th dose dependent sin 0 NA
906 240.69 humidity 90 720 > th dose dependent rect. 20 4
954 240.89 radiation 1 1440 < th dose independent rect. 18 23
975 241.02 humidity 70 1440 > th dose dependent rect. 7 14