BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0380000 Os09g0380000|AK068230
(347 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23050.1 | chr5:7731513-7735399 REVERSE LENGTH=722 382 e-106
AT1G55320.1 | chr1:20633371-20636659 FORWARD LENGTH=728 316 9e-87
AT5G36880.2 | chr5:14534961-14540296 REVERSE LENGTH=744 74 1e-13
>AT5G23050.1 | chr5:7731513-7735399 REVERSE LENGTH=722
Length = 721
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/303 (62%), Positives = 225/303 (74%), Gaps = 2/303 (0%)
Query: 2 VFEEMGITFSVEPSCILRENDA--YPGGEWLPGAVLNAAANCLTAKPGRSSDDVAIVWRD 59
V +E+ I FSV P CIL ++ + PGG+WLPGA LN A NCLT R DD+ I WRD
Sbjct: 133 VLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCLTNGFKRRLDDIVIRWRD 192
Query: 60 EGKDSEPLNFVTLEELRKKVCXXXXXXXXXXXXKGSAIAIDMPMNVNAVVIYLAIVLAGY 119
EG D P+N +TL ELR +V + SAIA+DMPMNV +V+IYLAIVLAG+
Sbjct: 193 EGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVDMPMNVESVIIYLAIVLAGH 252
Query: 120 VVVSIADSFAAPAISMRLKISEAKAIFTQDYILRDDKELPLYSRVVEAKAPMTIVIPVRG 179
VVVSIADSF+ IS RLKIS+AKAIFTQD I+R DK +PLY RVV+A+AP+ IV+P RG
Sbjct: 253 VVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPLYRRVVDAEAPLAIVVPARG 312
Query: 180 STPIKGLRADDLSWEDFLAKVNHAKADNYTAVEQPAYAFTNILFSSGTTGEPKAIPWTHL 239
S+ LR DLSW +FL + + Y A E+PA A+TNILFSSGTTGEPKAIPWT++
Sbjct: 313 SSCRMKLREKDLSWNNFLGNARNLRGVEYVAAEKPAGAYTNILFSSGTTGEPKAIPWTNI 372
Query: 240 TPLKSAADGWCHMDIRRGDVVAWPTNLGWMMGPWLVYASLLNGASMALYNGSLNSSGFAK 299
+PLKSAAD WCH+D++RGDVVAWPTNLGWMMGPWLVYASL+NGA M LYNGS FAK
Sbjct: 373 SPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASLINGACMGLYNGSPLGPTFAK 432
Query: 300 FVQ 302
FVQ
Sbjct: 433 FVQ 435
>AT1G55320.1 | chr1:20633371-20636659 FORWARD LENGTH=728
Length = 727
Score = 316 bits (810), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 205/306 (66%), Gaps = 7/306 (2%)
Query: 1 MVFEEMGITFSVEPSCILRENDAYPGGEWLPGAVLNAAANCL--TAKPGRSSDDVAIVWR 58
V +E+ + F P CIL N + P G WLP AVLN A CL ++ P + D VA+VWR
Sbjct: 138 FVIDELSLVFHTPPRCIL--NKSKPEGTWLPDAVLNIAECCLMPSSHPKKEDDSVAVVWR 195
Query: 59 DEGKDSEPLNFVTLEELRKKVCXXXXXXXXXXXXKGSAIAIDMPMNVNAVVIYLAIVLAG 118
+EG D P+N +T++ELR++V KG IAIDMPM V+AV+IYLAI+LAG
Sbjct: 196 NEGFDDSPVNRMTIKELREQV-MLVANAISGSFEKGDTIAIDMPMTVDAVIIYLAIILAG 254
Query: 119 YVVVSIADSFAAPAISMRLKISEAKAIFTQDYILRDDKELPLYSRVVEAKAPMTIVIPVR 178
+VVSIADSFAA I+ RLKIS+AK IFTQDYILR + PLYSRVVEA IV+P
Sbjct: 255 CIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLYSRVVEAAPSKVIVLPAS 314
Query: 179 GSTPIKGLRADDLSWEDFLAKVN-HAKADN-YTAVEQPAYAFTNILFSSGTTGEPKAIPW 236
G+ LR D+SW DFL+ H+ +N Y + P + NILFSSGTTGEPKAIPW
Sbjct: 315 GTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVINILFSSGTTGEPKAIPW 374
Query: 237 THLTPLKSAADGWCHMDIRRGDVVAWPTNLGWMMGPWLVYASLLNGASMALYNGSLNSSG 296
T L+P++SA DGW H+D++ G WPTNLGW+MGP L+++ L GA++ALY+GS G
Sbjct: 375 TQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCFLTGATLALYSGSPLGRG 434
Query: 297 FAKFVQ 302
F KFVQ
Sbjct: 435 FGKFVQ 440
>AT5G36880.2 | chr5:14534961-14540296 REVERSE LENGTH=744
Length = 743
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 122/281 (43%), Gaps = 21/281 (7%)
Query: 28 EWLPGAVLNAAANCLTAK-PGRSSDDVAIVWRDEGKDSEPLNFVTLEELRKKVCXXXXXX 86
EW G + N NCL D AI W EG + +T EL ++VC
Sbjct: 157 EWFKGGITNICYNCLDKNVEAGLGDKTAIHW--EGNELGVDASLTYSELLQRVCQLANYL 214
Query: 87 XXXXXXKGSAIAIDMPMNVNAVVIYLAIVLAGYVVVSIADSFAAPAISMRLKISEAKAIF 146
KG A+ I +PM + + LA G V + F+A +++ R+ + I
Sbjct: 215 KDNGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVIL 274
Query: 147 TQDYILRDDKELPLYSRVVEA-----KAPMTIVIPVRGSTPIKGLRAD-------DLSWE 194
T + + R K + L + V A K +++ I + + R + D+ W+
Sbjct: 275 TCNAVKRGPKTINLKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQ 334
Query: 195 DFLAKVNHAKADNYTAVEQPAYAFTNILFSSGTTGEPKAIPWTHLTPLKSAADGWCH-MD 253
D +++ + + E P + +L++SG+TG+PK + T + A + + D
Sbjct: 335 DVISQYPTSCEVEWVDAEDPLF----LLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFD 390
Query: 254 IRRGDVVAWPTNLGWMMG-PWLVYASLLNGASMALYNGSLN 293
+ DV + GW+ G ++ Y +LNGA++ ++ G+ N
Sbjct: 391 YKSTDVYWCTADCGWITGHSYVTYGPMLNGATVVVFEGAPN 431
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,151,148
Number of extensions: 279901
Number of successful extensions: 570
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)