Os09g0376000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0376000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.37 | 0.705 | 3.04 | -0.0629 | 0.152 | 2.39 | 0.55 | 8.65 | -0.169 | 22 | 1.057 | 4 | 5.1 | 9.1 |
| 236.31 | 0.716 | 3.02 | -0.193 | 0.193 | 3.18 | 0.254 | -- | -0.219 | 23.3 | 1.023 | 3 | 7.94 | 5.17 |
| 226.36 | 0.701 | 3.03 | -0.0646 | 0.152 | 2.37 | -- | 8.42 | -0.165 | 23.5 | 1.057 | 4 | 5.02 | 10.5 |
| 235.04 | 0.714 | 3.02 | -0.125 | 0.165 | 4.29 | -- | -- | -0.166 | 23.9 | 1.203 | 3 | 7.67 | 5.89 |
| 227.63 | 0.703 | 3.02 | -0.124 | -- | 2.3 | -- | 8.46 | -0.143 | -- | 1.07 | 5 | 5.02 | 10.4 |
| 253.96 | 0.747 | 3.02 | -0.0896 | 0.146 | -- | 0.295 | -- | -0.177 | 0.239 | -- | -- | -- | -- |
| 254.31 | 0.747 | 3.02 | -0.102 | 0.147 | -- | -- | -- | -0.179 | 0.773 | -- | -- | -- | -- |
| 236.5 | 0.716 | 3.02 | -0.126 | -- | 4.28 | -- | -- | -0.165 | -- | 1.376 | 8 | 7.59 | 5.88 |
| 235.19 | 0.714 | 3.02 | -- | 0.166 | 4.32 | -- | -- | -0.152 | 23.9 | 1.301 | 8 | 7.62 | 5.76 |
| 255.66 | 0.747 | 3.02 | -0.0963 | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
| 254.58 | 0.746 | 3.02 | -- | 0.145 | -- | -- | -- | -0.168 | 0.741 | -- | -- | -- | -- |
| 236.92 | 0.717 | 3.01 | -- | -- | 4.26 | -- | -- | -0.151 | -- | 1.306 | 8 | 7.6 | 5.77 |
| 255.9 | 0.747 | 3.02 | -- | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.40 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 3 | 228.62 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 5 | 228.71 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 9 | 231.23 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 7 | 7 |
| 17 | 231.23 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 25 | 231.83 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 28 | 231.89 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 8 |
| 29 | 231.90 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 35 | 231.98 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 82 | 232.32 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 88 | 232.35 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 6 | 5 |
| 91 | 232.35 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 99 | 232.39 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 105 | 232.39 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 116 | 232.41 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 3 |
| 132 | 232.41 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 187 | 234.73 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 1 |
| 224 | 234.73 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 269 | 236.56 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 18 | 1 |
| 271 | 236.67 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 302 | 238.75 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 5 |
| 310 | 239.80 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 19 | 4 |
| 311 | 239.85 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 312 | 239.95 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 313 | 239.98 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 19 | 3 |
| 314 | 240.07 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 374 | 240.07 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 440 | 240.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 1 |
| 442 | 240.33 | radiation | 30.0 | 30 | < th | dose independent | sin | 11 | NA |
| 462 | 241.08 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 17 | 4 |
| 473 | 241.45 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 488 | 241.51 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 6 |
| 499 | 241.57 | radiation | 30.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 515 | 241.58 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 717 | 241.99 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 887 | 242.36 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 1 |
| 904 | 242.38 | wind | 1.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 923 | 242.56 | radiation | 20.0 | 90 | < th | dose independent | rect. | 21 | 13 |
| 998 | 242.82 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 1 |