BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0376000 Os09g0376000|AK119322
         (459 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09680.1  | chr4:6116819-6123017 FORWARD LENGTH=1275           155   5e-38

>AT4G09680.1 | chr4:6116819-6123017 FORWARD LENGTH=1275
          Length = 1274

 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 172/345 (49%), Gaps = 12/345 (3%)

Query: 105 VCCYLLDFDPDAVDREIHVLAWNYLPSLHHGGAGVLEVVRWRLAEEGTPAPGSGFLKTIP 164
           +CC +L F+  A+  +I VL+WN+LP  H GG   LE++ W+  + G+       + + P
Sbjct: 95  ICCDILGFEFRAIGSKICVLSWNFLPMNHSGG--FLEIINWKFVDSGSLLSRCSGISSFP 152

Query: 165 LDCVDAEPDSGTXXXXXXXXXXXXXXXXXPRAGQKSNAGGGDNSVGFIAEMMXXXXXXXX 224
           L  + +   S                   P +      G   +SV     ++        
Sbjct: 153 L--IPSLYSSQNGDRKSRYSVCGVLESISPVSVVPCMDGVSSDSVNLPGFLVHVMACECK 210

Query: 225 VLPPES-DQDHKFELEKFVYFVD-SASWWRPVLARMVGRPVSVSGLKKRLVSIDRKGSYT 282
           V   ++ D  H FE   FVYF    A+ W PV+ ++VGR V++SGLK++LV + R  S  
Sbjct: 211 VYSRDAIDCGHAFERSVFVYFCGLEAASWHPVVMKLVGRNVALSGLKRKLVYV-RGDSLL 269

Query: 283 MLVSTRKTMLR--WCPSYPAVLK-LDGSPGDCXXXXXXXXXXIYMQRMLIELDKIVWLLI 339
           + V+T  ++L   W      V K +    G+C          +Y++  L+E+D+ VWLL+
Sbjct: 270 VFVTTENSVLHPPWLSKKGTVSKTVVDRRGNCGSYRGYVRG-LYLKGKLVEMDEDVWLLL 328

Query: 340 DDQHLAPSHSLRVGAVISVKNGRAICLKLAWTRTLLLGTCIKTSITINSFSLVDSKSYIK 399
            DQ L  SHS+R G++I ++N   +  K  W   L+LG C KTSIT+  FS  ++   + 
Sbjct: 329 TDQILNRSHSIRTGSLIFIRNVHFVNTKFPWGEVLILGACFKTSITVEFFSPFETSCLVD 388

Query: 400 AEDKGLLGKFVDSFELPARFWMLILIPCFKQKFTKLFSEKEILGS 444
           +  +  L  +V+S   PAR W L++   F +KF ++ S+KEIL S
Sbjct: 389 SCRQTSLSLYVESLSFPARLWTLLVRISF-EKFNRMPSDKEILRS 432



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,628,688
Number of extensions: 321742
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 2
Length of query: 459
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 357
Effective length of database: 8,310,137
Effective search space: 2966718909
Effective search space used: 2966718909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)