Os09g0371700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0371700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.41 | 0.246 | 8.62 | 2.05 | 0.267 | -0.809 | -0.635 | 3.11 | 0.414 | 2.35 | 25.7 | 1217 | -- | -- |
| 30.23 | 0.256 | 8.72 | 1.31 | 0.264 | -0.532 | -0.375 | -- | 0.244 | 1.34 | 25.48 | 1086 | -- | -- |
| 28.81 | 0.25 | 8.63 | 2.03 | 0.259 | -0.798 | -- | 2.93 | 0.39 | 2.41 | 26.07 | 1242 | -- | -- |
| 30.84 | 0.259 | 8.72 | 1.31 | 0.268 | -0.528 | -- | -- | 0.235 | 2.08 | 25.8 | 1136 | -- | -- |
| 31.23 | 0.26 | 8.61 | 2.17 | -- | -0.83 | -- | 3.47 | 0.452 | -- | 25.53 | 1722 | -- | -- |
| 39.04 | 0.293 | 8.72 | 1.14 | 0.181 | -- | -0.644 | -- | 0.198 | 3.07 | -- | -- | -- | -- |
| 40.41 | 0.298 | 8.72 | 1.16 | 0.179 | -- | -- | -- | 0.202 | 3.18 | -- | -- | -- | -- |
| 34.66 | 0.274 | 8.71 | 1.31 | -- | -0.423 | -- | -- | 0.246 | -- | 25.6 | 1499 | -- | -- |
| 72.94 | 0.398 | 8.76 | -- | 0.235 | -0.258 | -- | -- | 0.042 | 1.81 | 28.7 | 1115 | -- | -- |
| 42.24 | 0.304 | 8.72 | 1.16 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 75.7 | 0.407 | 8.75 | -- | 0.202 | -- | -- | -- | 0.0732 | 3.19 | -- | -- | -- | -- |
| 75.28 | 0.404 | 8.76 | -- | -- | -0.248 | -- | -- | 0.0213 | -- | 33.6 | 999 | -- | -- |
| 78.02 | 0.412 | 8.75 | -- | -- | -- | -- | -- | 0.0776 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 27.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 3 | 27.23 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 4 | 27.24 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 9 | 27.31 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 11 | 27.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 26 | 27.44 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 30 | 27.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 42 | 27.50 | wind | 5 | 43200 | > th | dose independent | sin | 22 | NA |
| 44 | 27.50 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 49 | 27.52 | wind | 5 | 43200 | < th | dose independent | sin | 22 | NA |
| 52 | 27.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 65 | 27.55 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 66 | 27.55 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 67 | 27.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 118 | 27.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 13 |
| 123 | 27.64 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 139 | 27.65 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 196 | 27.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 224 | 27.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 236 | 27.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 262 | 27.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 347 | 27.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 400 | 27.90 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 412 | 27.91 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 471 | 27.95 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 495 | 27.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 543 | 27.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 576 | 28.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 581 | 28.01 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 601 | 28.02 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 655 | 28.05 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 661 | 28.05 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 672 | 28.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 689 | 28.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 733 | 28.09 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 776 | 28.12 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 831 | 28.15 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 843 | 28.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 878 | 28.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 897 | 28.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 919 | 28.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |