BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0371700 Os09g0371700|AK063842
(213 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35330.1 | chr2:14869179-14871673 FORWARD LENGTH=739 139 1e-33
AT1G32530.1 | chr1:11759666-11762386 REVERSE LENGTH=712 117 5e-27
AT1G03365.1 | chr1:827182-830191 FORWARD LENGTH=824 90 1e-18
AT4G03000.1 | chr4:1324602-1327348 FORWARD LENGTH=815 86 1e-17
>AT2G35330.1 | chr2:14869179-14871673 FORWARD LENGTH=739
Length = 738
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 129/213 (60%), Gaps = 7/213 (3%)
Query: 2 WDRQKAKLQEDIAECKTKITQVDRELAEINKAIRNMEMKIREDTKAKEENLALAEQEHAK 61
W++QK KLQ++I K KI ++R LA+I + + E K R++ KAKE+ LA E+E
Sbjct: 531 WEKQKMKLQDEITAEKEKIKALNRALAQITQEEKEYEAKWRQEQKAKEQVLAQVEEEQRS 590
Query: 62 RESAKANAERRLEEIRQKTEVESRCFKDDIKRLEDELARLQKSMGVNHP--TVPSTHPPG 119
+E+ +A+ +R++E +R K E++ + KDD++RLE EL+RL K+ + + ++H
Sbjct: 591 KEAIEASNKRKVESLRLKIEIDFQRHKDDLQRLEQELSRLNKASSTDSSLQSNNTSHTKV 650
Query: 120 VADRNSTRAPKQPTNQRPSPASNKQSQAPTQKTSRRRDCVICKREEACVILLQCAHQVLC 179
+D++ K T + N+ + ++ + R+C+IC ++E V+ L CAHQV+C
Sbjct: 651 KSDKS-----KGETMSKLLEELNRLDGSYEKEANYDRECLICMKDEVSVVFLPCAHQVVC 705
Query: 180 VGCNKRHEEKGVARCPCCNAKVEERIRVFGASS 212
C+ G A CPCC A V++RIRVFGASS
Sbjct: 706 ASCSDSFMGSGKATCPCCRAPVQQRIRVFGASS 738
>AT1G32530.1 | chr1:11759666-11762386 REVERSE LENGTH=712
Length = 711
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 17/218 (7%)
Query: 2 WDRQKAKLQEDIAECKTKITQVDRELAEINKAIRNMEMKIREDTKAKEENLALAEQEHAK 61
W++Q KLQ++I K KI + + LA+I + + +E K R++ KAKEE LA E+E
Sbjct: 504 WEKQILKLQDEITAEKEKIKALYKTLAQITEYEKEIEAKWRQEQKAKEEALAQMEEEQRS 563
Query: 62 RESAKANAERRLEEIRQKTEVESRCFKDDIKRLEDELARLQKSMGVNHPTVPSTHPPGVA 121
+E+A+ + +R+LE +R K E++ + KDD +RLE EL RL+ S + +
Sbjct: 564 KEAAEGHNKRKLETLRLKIELDFQRHKDDHQRLEQELGRLKASSDSDSSHIS-------- 615
Query: 122 DRNSTRAPKQPTNQRPSPAS---NKQSQAPTQKTSRRRDCVICKREEACVILLQCAHQVL 178
N+ PK+ + + +K + + + R+C+IC ++E V+ L CAHQV+
Sbjct: 616 --NNAWKPKKSQGENIAKLLEEIDKLEGSYDNEANYDRECIICMKDEVSVVFLPCAHQVV 673
Query: 179 CVGCNKRH--EEKGVAR--CPCCNAKVEERIRVFGASS 212
C C+ G ++ CPCC V++RIR+FGA+S
Sbjct: 674 CGSCSDSFFASNNGGSKVTCPCCRGLVQQRIRIFGATS 711
>AT1G03365.1 | chr1:827182-830191 FORWARD LENGTH=824
Length = 823
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 2 WDRQKAKLQEDIAECKTKITQVDRELAEINKAIRNMEMKIREDTKAKEENLALAEQEHAK 61
W+ QK LQE++ + K+T + +E+ + +E ++++ AK + A+ +
Sbjct: 631 WEGQKIMLQEELKGQREKVTVLQKEVTKAKNRQNQIEAALKQERTAKGK--LSAQASLIR 688
Query: 62 RESAKANAERRLEE--IRQKTEVESRCFKDDIKRLEDELARLQKSMGVNHPTVPSTHPPG 119
+E+ + A ++EE I+ K E + + + D+IKRLE E++ L+
Sbjct: 689 KETKELEALGKVEEERIKGKAETDVKYYIDNIKRLEREISELKLK--------------- 733
Query: 120 VADRNSTRAPKQPTNQRPSPASNKQSQAPTQKTSRRRDCVICKREEACVILLQCAHQVLC 179
+D + A K+ +++ S A+ ++S K R R+CV+C EE VI L CAHQVLC
Sbjct: 734 -SDYSRIIALKKGSSE--SKATKRESLG-MPKVKRERECVMCLSEEMSVIFLPCAHQVLC 789
Query: 180 VGCNKRHEEKGVARCPCCNAKVEERIR 206
CN+ HE++G+ CP C + RI+
Sbjct: 790 FKCNQLHEKEGMMDCPSCRGTIHRRIQ 816
>AT4G03000.1 | chr4:1324602-1327348 FORWARD LENGTH=815
Length = 814
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 2 WDRQKAKLQEDIAECKTKITQVDRELAEINKAIRNMEMKIRED----TKAKEENLALAEQ 57
W+ QK LQE++ + K+ + +E+A+ +E +++ K + AL ++
Sbjct: 601 WEGQKNLLQEELKSQRDKVAGLQQEVAKAKTRQNQIEATWKQEKSATGKLTAQAAALKKE 660
Query: 58 EHAKRESAKANAERRLEEIRQKTEVESRCFKDDIKRLEDELARLQKSMGVNHPTVPSTHP 117
E KA ER I+ K E + + + ++IKRL+ E+++L+
Sbjct: 661 RGKLEELGKAEEER----IKTKAENDVKYYIENIKRLDTEISKLKLKSDSLKIAALKKGI 716
Query: 118 PGVADRNSTRAPKQPTNQRPSPASNK---QSQAPTQKTSRRRDCVICKREEACVILLQCA 174
G D N + + S AS K +Q K R R+CV+C EE VI L CA
Sbjct: 717 DGNNDGNKSGMNHTTNTKANSMASAKVWENNQGAESKIKRERECVMCLSEEMSVIFLPCA 776
Query: 175 HQVLCVGCNKRHEEKGVARCPCCNAKVEERIR 206
HQVLC CN+ HE++ + CP C AK++ RI+
Sbjct: 777 HQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.126 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,442,478
Number of extensions: 187263
Number of successful extensions: 2059
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2077
Number of HSP's successfully gapped: 6
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)