Os09g0369000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DRE binding factor 1.
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Os09g0369000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DRE binding factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.85 | 0.348 | 13.1 | 2.13 | 0.0949 | -2.08 | -1.25 | 3.1 | 0.613 | 11.3 | 21.13 | 252 | -- | -- |
| 59.4 | 0.359 | 13.1 | 1.52 | 0.258 | -1.86 | -1.16 | -- | 0.427 | 8.74 | 20.62 | 191 | -- | -- |
| 60.86 | 0.363 | 13.1 | 2.02 | 0.132 | -1.95 | -- | 2.79 | 0.584 | 7.24 | 21.12 | 259 | -- | -- |
| 63.82 | 0.372 | 13.1 | 1.47 | 0.286 | -1.79 | -- | -- | 0.423 | 8.15 | 20.6 | 181 | -- | -- |
| 61.55 | 0.365 | 13.1 | 2 | -- | -2.03 | -- | 2.69 | 0.585 | -- | 21.22 | 284 | -- | -- |
| 117.29 | 0.508 | 13.2 | 1.07 | 0.866 | -- | 0.153 | -- | 0.122 | 5.12 | -- | -- | -- | -- |
| 117.34 | 0.507 | 13.2 | 1.07 | 0.868 | -- | -- | -- | 0.121 | 5.17 | -- | -- | -- | -- |
| 66.45 | 0.38 | 13.2 | 1.49 | -- | -1.87 | -- | -- | 0.443 | -- | 20.83 | 254 | -- | -- |
| 116.61 | 0.503 | 13.2 | -- | 0.367 | -1.34 | -- | -- | 0.213 | 6.65 | 21.93 | 161 | -- | -- |
| 156.77 | 0.585 | 13.2 | 1.1 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 147.57 | 0.568 | 13.2 | -- | 0.887 | -- | -- | -- | 0.00183 | 5.13 | -- | -- | -- | -- |
| 121.56 | 0.514 | 13.2 | -- | -- | -1.53 | -- | -- | 0.194 | -- | 22.97 | 252 | -- | -- |
| 188.78 | 0.641 | 13.2 | -- | -- | -- | -- | -- | 0.0208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 14 | 55.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 18 | 56.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 20 | 56.28 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 106 | 61.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 119 | 62.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 185 | 63.99 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 187 | 64.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 221 | 64.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 251 | 64.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 259 | 64.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 277 | 64.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 437 | 66.57 | temperature | 20 | 720 | > th | dose dependent | sin | 0 | NA |
| 470 | 66.83 | temperature | 20 | 90 | > th | dose dependent | sin | 20 | NA |
| 513 | 67.21 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 624 | 68.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 745 | 68.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 779 | 69.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 805 | 69.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 825 | 69.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 844 | 69.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |