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Os09g0364500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GTP-binding protein, HSR1-related domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.2 (0.0267) R2 : 0.824
β1 : 2.57 (0.0976) R2dD : 0.277 R2D : 0.237
β2 : 2.67 (0.0694) R2dC : 0.573 R2C : 0.549
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.42 (0.0569) R2dN8 : 0.0281 R2N8 : -0.0157
σ : 0.501
deviance : 114.45
__
_____
C
peak time of C : 18.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
102.57 0.476 8.22 2.55 2.46 0.909 0.424 0.556 0.356 19.3 3.005 258 -- --
103.19 0.473 8.22 2.55 2.47 0.879 0.4 -- 0.356 19.3 3.212 258 -- --
103.05 0.473 8.22 2.54 2.46 0.905 -- 0.536 0.358 19.3 3.235 258 -- --
103.63 0.474 8.22 2.54 2.47 0.895 -- -- 0.355 19.3 3.002 258 -- --
206.34 0.669 8.21 2.35 -- 2.78 -- -0.197 0.0913 -- -100.7 746 -- --
113.75 0.5 8.2 2.58 2.67 -- 0.528 -- 0.418 18.6 -- -- -- --
114.45 0.501 8.2 2.57 2.67 -- -- -- 0.42 18.6 -- -- -- --
206.39 0.669 8.21 2.36 -- 2.77 -- -- 0.0947 -- -69.01 746 -- --
272.11 0.768 8.28 -- 2.38 1.03 -- -- 0.127 19.3 9.997 345 -- --
485.61 1.03 8.15 2.5 -- -- -- -- 0.365 -- -- -- -- --
288.33 0.794 8.27 -- 2.64 -- -- -- 0.134 18.6 -- -- -- --
352.64 0.875 8.27 -- -- 2.86 -- -- -0.176 -- -20.78 755 -- --
650.96 1.19 8.21 -- -- -- -- -- 0.0875 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.39 wind 7.0 270 < th dose independent rect. 9 18
2 91.81 radiation 20.0 270 < th dose independent rect. 15 18
3 91.90 radiation 30.0 270 < th dose independent rect. 3 7
4 92.22 radiation 40.0 270 < th dose dependent rect. 15 18
9 92.58 radiation 1.0 90 < th dose independent rect. 22 8
12 92.71 wind 7.0 270 < th dose independent rect. 8 9
15 92.90 radiation 40.0 270 < th dose dependent rect. 3 7
16 92.92 radiation 1.0 90 > th dose independent sin 9 NA
17 92.94 temperature 10.0 270 > th dose dependent rect. 8 8
18 92.97 wind 7.0 270 < th dose independent rect. 8 20
19 93.13 temperature 30.0 90 < th dose independent rect. 5 17
20 93.16 radiation 1.0 90 < th dose dependent rect. 22 8
21 93.18 radiation 1.0 90 < th dose independent sin 9 NA
22 93.19 radiation 1.0 90 < th dose dependent sin 9 NA
39 93.69 radiation 1.0 90 < th dose dependent rect. 22 12
40 93.70 radiation 1.0 90 < th dose independent rect. 22 12
51 93.80 radiation 40.0 270 < th dose dependent rect. 4 5
56 93.85 radiation 1.0 90 < th dose dependent rect. 22 17
57 93.86 radiation 1.0 90 < th dose independent rect. 22 17
64 93.99 radiation 40.0 270 < th dose independent rect. 3 19
68 94.00 humidity 60.0 10 > th dose dependent rect. 22 8
72 94.05 humidity 70.0 90 > th dose independent rect. 5 17
73 94.05 humidity 60.0 10 > th dose independent rect. 6 17
75 94.08 radiation 40.0 270 < th dose dependent rect. 3 18
76 94.12 radiation 40.0 270 < th dose dependent rect. 4 16
78 94.13 humidity 70.0 270 > th dose independent rect. 3 7
93 94.35 radiation 1.0 90 > th dose independent rect. 4 5
125 94.49 precipitation 0.1 270 < th dose independent rect. 3 6
126 94.49 precipitation 0.1 270 < th dose dependent rect. 3 6
154 94.71 humidity 50.0 270 > th dose independent rect. 16 16
164 94.80 temperature 30.0 270 < th dose independent rect. 3 6
168 94.81 temperature 30.0 30 < th dose dependent rect. 6 16
177 94.86 temperature 10.0 270 > th dose dependent rect. 8 19
183 94.93 humidity 50.0 270 > th dose dependent rect. 21 6
189 94.96 temperature 30.0 270 < th dose independent rect. 3 17
194 95.00 wind 7.0 270 < th dose independent rect. 3 6
205 95.14 precipitation 0.1 270 < th dose independent rect. 9 18
206 95.14 precipitation 0.1 270 < th dose dependent rect. 9 18
209 95.16 humidity 50.0 10 > th dose dependent rect. 6 17
215 95.20 temperature 10.0 270 > th dose independent rect. 3 6
217 95.20 humidity 50.0 270 > th dose independent rect. 3 6
218 95.20 atmosphere 995.0 270 > th dose independent rect. 3 6
219 95.20 atmosphere 1015.0 270 < th dose independent rect. 3 6
220 95.20 temperature 10.0 270 > th dose independent rect. 9 18
225 95.25 humidity 70.0 90 > th dose independent rect. 5 6
237 95.32 radiation 20.0 270 < th dose independent rect. 3 18
259 95.53 humidity 50.0 270 > th dose dependent rect. 20 8
260 95.55 humidity 70.0 270 > th dose independent rect. 3 17
276 95.70 radiation 20.0 270 < th dose independent rect. 4 16
277 95.72 radiation 40.0 90 < th dose independent rect. 6 16
279 95.73 wind 7.0 270 < th dose independent rect. 22 16
281 95.75 temperature 30.0 270 < th dose independent rect. 16 16
283 95.78 humidity 90.0 10 < th dose independent rect. 5 4
289 95.85 radiation 40.0 90 < th dose dependent rect. 6 17
300 95.92 wind 9.0 270 < th dose dependent rect. 9 18
340 96.22 atmosphere 1015.0 270 < th dose independent rect. 4 17
364 96.36 wind 9.0 10 < th dose independent rect. 23 7
365 96.36 temperature 10.0 10 > th dose independent rect. 23 7
366 96.36 temperature 30.0 10 < th dose independent rect. 23 7
367 96.36 humidity 50.0 10 > th dose independent rect. 23 7
370 96.36 atmosphere 995.0 10 > th dose independent rect. 23 7
371 96.36 radiation 20.0 10 < th dose independent rect. 23 7
377 96.36 temperature 10.0 10 > th dose independent rect. 6 17
379 96.36 atmosphere 1015.0 10 < th dose independent rect. 6 17
393 96.41 wind 9.0 270 < th dose independent rect. 20 8
398 96.43 temperature 10.0 270 > th dose independent rect. 20 8
399 96.43 temperature 30.0 270 < th dose independent rect. 20 8
400 96.43 humidity 50.0 270 > th dose independent rect. 20 8
403 96.43 atmosphere 995.0 270 > th dose independent rect. 20 8
410 96.43 temperature 10.0 270 > th dose independent rect. 4 16
418 96.44 wind 9.0 270 < th dose dependent rect. 8 8
446 96.51 wind 9.0 270 < th dose dependent rect. 8 20
455 96.54 radiation 40.0 270 < th dose independent rect. 13 9
499 96.63 wind 7.0 270 < th dose independent rect. 4 4
528 96.67 humidity 50.0 270 > th dose independent rect. 14 8
530 96.68 temperature 10.0 1440 > th dose independent rect. 24 7
533 96.68 temperature 30.0 1440 < th dose independent rect. 24 7
537 96.68 humidity 50.0 1440 > th dose independent rect. 24 7
542 96.68 atmosphere 995.0 1440 > th dose independent rect. 24 7
543 96.68 radiation 40.0 1440 < th dose independent rect. 24 7
550 96.68 temperature 10.0 1440 > th dose independent rect. 7 17
555 96.69 atmosphere 995.0 10 > th dose independent rect. 6 17
621 96.82 temperature 10.0 270 > th dose independent rect. 4 4
623 96.82 temperature 30.0 270 < th dose independent rect. 4 4
624 96.82 humidity 50.0 270 > th dose independent rect. 4 4
626 96.82 atmosphere 995.0 270 > th dose independent rect. 4 4
627 96.82 atmosphere 1015.0 270 < th dose independent rect. 4 4
631 96.82 temperature 10.0 270 > th dose independent rect. 8 20
637 96.84 humidity 50.0 270 > th dose dependent rect. 3 7
650 96.87 wind 9.0 270 < th dose dependent rect. 9 6
672 96.92 precipitation 0.1 10 < th dose independent rect. 6 17
673 96.92 precipitation 0.1 270 < th dose independent rect. 3 18
674 96.92 precipitation 0.1 10 < th dose dependent rect. 6 17
675 96.92 precipitation 0.1 270 < th dose dependent rect. 3 18
688 96.96 precipitation 0.1 270 < th dose independent rect. 8 9
690 96.96 precipitation 0.1 270 < th dose dependent rect. 8 9
694 96.97 precipitation 0.1 270 < th dose independent rect. 21 6
696 96.97 precipitation 0.1 270 < th dose dependent rect. 21 6
713 97.02 atmosphere 1010.0 270 < th dose independent rect. 14 8
718 97.03 precipitation 0.1 270 < th dose independent rect. 17 15
722 97.03 precipitation 0.1 270 < th dose dependent rect. 17 15
738 97.08 humidity 70.0 30 > th dose independent rect. 6 4
741 97.09 precipitation 0.1 270 < th dose independent rect. 4 16
744 97.09 precipitation 0.1 270 < th dose dependent rect. 4 16
749 97.10 temperature 15.0 270 > th dose independent rect. 16 16
765 97.16 humidity 70.0 90 > th dose independent rect. 17 18
768 97.17 temperature 15.0 270 > th dose independent rect. 14 8
775 97.19 temperature 10.0 270 > th dose independent rect. 8 8
776 97.19 atmosphere 1015.0 270 < th dose independent rect. 8 8
818 97.23 humidity 50.0 270 > th dose independent rect. 3 18
819 97.23 humidity 50.0 270 > th dose dependent rect. 3 17
841 97.33 wind 1.0 30 > th dose independent rect. 6 17
883 97.37 precipitation 0.1 270 < th dose independent rect. 20 8
893 97.37 precipitation 0.1 270 < th dose dependent rect. 20 8
894 97.37 temperature 30.0 270 < th dose dependent rect. 3 17
898 97.39 wind 9.0 30 < th dose independent rect. 6 17
950 97.50 radiation 1.0 270 > th dose independent rect. 8 9
963 97.52 atmosphere 995.0 270 > th dose independent rect. 9 18
993 97.57 precipitation 0.1 30 < th dose independent rect. 23 7
997 97.57 precipitation 0.1 30 < th dose dependent rect. 23 7