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Os09g0362800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase M1, membrane alanine aminopeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0271) R2 : 0.358
β1 : -1.26 (0.0994) R2dD : 0.235 R2D : 0.263
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.412 (0.0579) R2dN8 : 0.0952 R2N8 : 0.124
σ : 0.509
deviance : 118.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.44 0.427 10.8 -2.02 0.672 -0.325 0.468 -3.49 0.262 6.8 0.8204 4367 -- --
92.54 0.448 10.8 -1.2 0.537 -0.346 0.323 -- 0.473 7.38 28.37 510 -- --
82.95 0.424 10.8 -2.03 0.672 -0.337 -- -3.55 0.262 6.88 0.7857 4378 -- --
89.34 0.44 10.8 -1.27 0.571 -0.464 -- -- 0.461 6.73 35.16 3161 -- --
96.02 0.456 10.8 -1.95 -- -0.796 -- -4.55 0.336 -- 1.442 5027 -- --
95.57 0.458 10.8 -1.28 0.66 -- 0.394 -- 0.4 6.73 -- -- -- --
95.95 0.459 10.8 -1.27 0.661 -- -- -- 0.399 6.83 -- -- -- --
103.13 0.473 10.8 -1.29 -- -0.727 -- -- 0.52 -- 19.56 2210 -- --
128.3 0.528 10.7 -- 0.519 -0.613 -- -- 0.604 7.05 40.06 2081 -- --
118.83 0.509 10.8 -1.26 -- -- -- -- 0.412 -- -- -- -- --
138.73 0.551 10.7 -- 0.646 -- -- -- 0.541 6.95 -- -- -- --
132.89 0.537 10.7 -- -- -0.756 -- -- 0.615 -- 30.33 769 -- --
160.68 0.592 10.7 -- -- -- -- -- 0.551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.38 radiation 1.0 4320 > th dose independent rect. 7 12
11 81.41 radiation 1.0 4320 < th dose dependent rect. 7 16
14 81.43 radiation 1.0 4320 < th dose dependent rect. 7 12
18 81.43 radiation 1.0 4320 < th dose dependent rect. 7 20
22 81.58 radiation 1.0 4320 < th dose dependent rect. 12 11
26 81.60 radiation 1.0 4320 < th dose dependent rect. 12 7
42 81.69 radiation 1.0 4320 < th dose dependent sin 19 NA
68 81.81 radiation 1.0 4320 < th dose independent rect. 7 20
70 81.82 radiation 1.0 4320 < th dose independent rect. 7 16
74 81.83 radiation 1.0 4320 < th dose independent rect. 7 12
82 81.85 radiation 1.0 4320 < th dose dependent rect. 16 1
156 82.14 radiation 1.0 4320 > th dose independent sin 21 NA
180 82.35 radiation 1.0 4320 > th dose independent rect. 12 7
201 82.47 radiation 1.0 4320 > th dose independent rect. 9 10
211 82.49 radiation 1.0 4320 < th dose independent sin 22 NA
250 82.62 wind 7.0 14400 < th dose dependent rect. 14 1
276 82.79 radiation 1.0 4320 < th dose independent rect. 12 15
278 82.80 radiation 1.0 4320 < th dose independent rect. 12 11
279 82.80 radiation 1.0 4320 < th dose independent rect. 12 13
282 82.81 radiation 1.0 4320 < th dose independent rect. 12 7
287 82.82 atmosphere 995.0 43200 < th dose dependent rect. 10 16
288 82.83 wind 1.0 14400 > th dose dependent rect. 14 1
295 82.90 radiation 1.0 4320 < th dose independent rect. 9 18
309 82.91 radiation 1.0 4320 < th dose independent rect. 9 14
317 82.92 radiation 1.0 4320 < th dose independent rect. 9 10
324 82.94 wind 1.0 43200 > th dose dependent rect. 4 2
337 82.99 wind 9.0 43200 < th dose dependent rect. 4 2
356 83.01 wind 3.0 43200 > th dose dependent rect. 21 11
359 83.01 atmosphere 995.0 43200 < th dose dependent rect. 2 21
374 83.05 radiation 1.0 4320 > th dose independent rect. 18 23
379 83.06 radiation 1.0 4320 < th dose independent rect. 18 23
386 83.10 atmosphere 995.0 43200 < th dose dependent rect. 2 17
389 83.11 atmosphere 995.0 43200 < th dose dependent sin 17 NA
398 83.17 humidity 80.0 1440 < th dose independent rect. 11 2
403 83.19 precipitation 0.1 43200 > th dose dependent rect. 16 1
414 83.23 precipitation 0.1 43200 > th dose independent rect. 8 1
425 83.23 radiation 1.0 4320 < th dose independent rect. 20 21
427 83.23 precipitation 0.1 43200 > th dose dependent rect. 8 1
431 83.24 atmosphere 995.0 43200 < th dose independent rect. 2 13
432 83.24 radiation 1.0 4320 < th dose independent rect. 22 19
436 83.25 radiation 1.0 4320 < th dose independent rect. 2 15
450 83.28 precipitation 0.1 43200 > th dose independent rect. 13 7
451 83.28 precipitation 0.1 43200 < th dose independent rect. 13 7
452 83.28 atmosphere 995.0 43200 < th dose independent rect. 16 22
454 83.28 precipitation 0.1 43200 < th dose dependent rect. 13 7
459 83.33 atmosphere 995.0 43200 < th dose independent rect. 14 16
463 83.33 radiation 1.0 4320 < th dose dependent rect. 12 22
470 83.35 precipitation 0.1 43200 > th dose dependent rect. 11 9
471 83.36 atmosphere 995.0 43200 < th dose independent sin 14 NA
475 83.36 atmosphere 995.0 43200 > th dose independent rect. 14 17
481 83.37 precipitation 0.1 43200 < th dose independent rect. 16 1
487 83.37 atmosphere 995.0 43200 > th dose independent rect. 15 14
488 83.37 atmosphere 995.0 43200 < th dose independent rect. 15 14
494 83.37 precipitation 0.1 43200 < th dose dependent rect. 16 1
495 83.37 wind 1.0 14400 > th dose dependent rect. 14 3
498 83.38 atmosphere 995.0 43200 > th dose independent sin 14 NA
499 83.38 precipitation 0.1 43200 < th dose independent rect. 8 1
505 83.38 precipitation 0.1 43200 < th dose dependent rect. 8 1
511 83.39 atmosphere 995.0 43200 < th dose independent rect. 16 11
513 83.39 atmosphere 995.0 43200 > th dose independent rect. 16 22
516 83.40 precipitation 0.1 43200 < th dose independent rect. 15 5
520 83.40 precipitation 0.1 43200 < th dose dependent rect. 15 5
527 83.40 radiation 1.0 4320 < th dose dependent rect. 12 20
539 83.41 atmosphere 995.0 43200 > th dose independent rect. 16 11
559 83.43 precipitation 0.1 43200 > th dose independent rect. 16 1
586 83.47 wind 9.0 43200 < th dose dependent rect. 3 4
589 83.47 radiation 1.0 4320 < th dose dependent rect. 9 23
598 83.48 radiation 1.0 4320 < th dose dependent rect. 18 23
599 83.49 atmosphere 995.0 43200 < th dose independent sin 4 NA
600 83.49 precipitation 0.1 43200 < th dose independent rect. 18 3
606 83.49 precipitation 0.1 43200 < th dose dependent rect. 18 3
618 83.51 atmosphere 995.0 43200 > th dose independent rect. 23 16
620 83.51 wind 3.0 43200 > th dose dependent sin 8 NA
624 83.51 atmosphere 995.0 43200 < th dose dependent rect. 14 11
627 83.52 wind 5.0 43200 > th dose independent rect. 3 7
631 83.52 radiation 1.0 4320 > th dose independent rect. 12 22
634 83.52 radiation 1.0 4320 < th dose dependent rect. 2 21
637 83.53 radiation 1.0 4320 > th dose independent rect. 16 1
638 83.53 radiation 1.0 4320 < th dose independent rect. 16 1
639 83.53 precipitation 0.1 43200 > th dose independent rect. 18 3
657 83.54 humidity 80.0 1440 > th dose independent rect. 11 2
663 83.54 atmosphere 995.0 43200 > th dose independent rect. 18 21
664 83.54 radiation 1.0 4320 < th dose dependent no NA NA
683 83.54 radiation 1.0 4320 < th dose dependent rect. 21 22
695 83.55 precipitation 0.1 43200 > th dose dependent rect. 18 3
711 83.56 atmosphere 995.0 43200 > th dose independent sin 5 NA
731 83.57 precipitation 0.1 43200 > th dose dependent rect. 13 4
750 83.60 wind 7.0 43200 < th dose independent rect. 12 1
758 83.61 wind 7.0 43200 > th dose independent rect. 11 2
759 83.61 radiation 10.0 14400 > th dose independent rect. 5 2
760 83.61 wind 5.0 43200 > th dose independent rect. 4 3
766 83.61 wind 5.0 43200 < th dose independent rect. 3 7
815 83.67 atmosphere 995.0 43200 < th dose dependent rect. 16 7
819 83.68 radiation 1.0 4320 < th dose independent rect. 12 22
830 83.70 radiation 1.0 4320 > th dose independent no NA NA
886 83.71 wind 5.0 43200 < th dose independent rect. 4 3
890 83.71 radiation 1.0 4320 > th dose independent rect. 9 23
894 83.72 humidity 90.0 14400 > th dose independent rect. 13 1
899 83.72 precipitation 0.1 14400 < th dose independent rect. 4 11
909 83.72 precipitation 0.1 14400 < th dose dependent rect. 4 11
977 83.79 precipitation 0.1 14400 > th dose independent rect. 4 11
994 83.80 wind 1.0 43200 < th dose independent rect. 3 6