BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0362800 Os09g0362800|AK068512
         (431 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33090.1  | chr4:15965915-15970418 REVERSE LENGTH=880          365   e-101

>AT4G33090.1 | chr4:15965915-15970418 REVERSE LENGTH=880
          Length = 879

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/390 (46%), Positives = 257/390 (65%), Gaps = 5/390 (1%)

Query: 43  WIVPITLGCNSHDMQKRFLLKHKFS--DIKGI--NSQYDDQDRQNSGNFWIKLNIDETGF 98
           WIVP+TL C S++ +K FLL+ K    D+K +   S  D  D+ N    WIK+N+D+ GF
Sbjct: 487 WIVPVTLCCGSYEKRKNFLLESKSGAYDLKELLGCSIADGSDKINGTCSWIKINVDQAGF 546

Query: 99  YRVKYDDELTTALRNALQMKKLSLMDKIGIVEDAHALSIAGKQTLSSLLHLLYACRDEDD 158
           YRVKYDD L   LRNA + + L+ +D+ GI++D+ AL++A +Q+L+SLL L  A + E D
Sbjct: 547 YRVKYDDSLAAGLRNATESQSLTSIDRYGILDDSFALTMARQQSLASLLTLCSAYKKELD 606

Query: 159 FSVLSHINSVTSSVAKISIDATPELAGEIKQLFIKLLLPTAEKLGWDPKNSESHLDAMLR 218
           ++VLS++ +++  V KI  DA  EL   IK  FI +    A KLGWDPK  ESHLDAMLR
Sbjct: 607 YTVLSNLIAISYKVVKIGADANQELMSGIKHFFIGVFQFAAGKLGWDPKQGESHLDAMLR 666

Query: 219 PVLLVGLVQLGHDKTISEGVRRFQIFFDDRNTS-LPPDTRKAAYLSVMHNVSSTNRSGYD 277
             +L  L   GHD+T+ E VRRF  F  DRNT  LPPD R+AAY++VM   + +++SGY+
Sbjct: 667 GEVLTALAVFGHDETLKEAVRRFDAFLADRNTPLLPPDIRRAAYVAVMQRANKSDKSGYE 726

Query: 278 ALLKIYRESTEVEERLNVLGILSSCQDKDIVLESLNFIFTDEVRNQDAYLVLRSVIIDAR 337
           +LL++YRE+   +E+  +LG L+SC D  IV + LNF+ +DEVRNQDA   L  V  + R
Sbjct: 727 SLLRVYRETDLSQEKTRILGSLASCPDPTIVQDVLNFVLSDEVRNQDALYGLSGVSWEGR 786

Query: 338 ETAWSWLKENWDRITKTFAASAILSDYVKSIVTLFTSKEKEAEISQFFATRTKPGFKRAL 397
           E AW WL+E W+ I  T+ +  +++ ++ ++V+ F S EK  E+ +FFATR+KP   R L
Sbjct: 787 EVAWKWLQEKWEYIGNTWGSGFLITRFISAVVSPFASFEKAKEVEEFFATRSKPSMARTL 846

Query: 398 KQSLENVRISARWVDGIRGEAELAQTVHDL 427
           KQS+E V I+A WV+ I+ E  L Q V  L
Sbjct: 847 KQSIERVHINANWVESIKKEDNLTQLVAQL 876



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,364,951
Number of extensions: 324796
Number of successful extensions: 984
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)