Os09g0352400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bystin.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0352400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Bystin.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.98 | 0.315 | 11.8 | -0.185 | 0.303 | 1.04 | 0.532 | -0.549 | 0.00324 | 17.6 | 18.39 | 78 | -- | -- |
| 45.18 | 0.313 | 11.8 | -0.0939 | 0.314 | 1.04 | 0.426 | -- | 0.035 | 17.7 | 18 | 67 | -- | -- |
| 45.52 | 0.314 | 11.8 | -0.133 | 0.315 | 1.04 | -- | -0.243 | 0.022 | 17.3 | 18.1 | 67 | -- | -- |
| 45.58 | 0.314 | 11.8 | -0.0945 | 0.317 | 1.03 | -- | -- | 0.0351 | 17.3 | 18.01 | 67 | -- | -- |
| 49.03 | 0.326 | 11.8 | -0.194 | -- | 1.26 | -- | -0.255 | -0.0148 | -- | 18.42 | 111 | -- | -- |
| 59.81 | 0.363 | 11.8 | 0.137 | 0.638 | -- | 0.392 | -- | 0.203 | 16.2 | -- | -- | -- | -- |
| 60.22 | 0.363 | 11.8 | 0.141 | 0.639 | -- | -- | -- | 0.205 | 16 | -- | -- | -- | -- |
| 49.09 | 0.326 | 11.8 | -0.16 | -- | 1.26 | -- | -- | -0.0114 | -- | 18.2 | 121 | -- | -- |
| 45.78 | 0.315 | 11.8 | -- | 0.325 | 0.992 | -- | -- | 0.0493 | 17.2 | 18.1 | 67 | -- | -- |
| 82.48 | 0.424 | 11.8 | 0.115 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 60.74 | 0.365 | 11.8 | -- | 0.636 | -- | -- | -- | 0.189 | 16 | -- | -- | -- | -- |
| 49.68 | 0.328 | 11.8 | -- | -- | 1.2 | -- | -- | 0.0149 | -- | 18.6 | 121 | -- | -- |
| 82.83 | 0.425 | 11.8 | -- | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 5 | 41.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 12 | 42.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 34 | 43.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 88 | 44.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 90 | 44.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 91 | 44.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 118 | 44.46 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 130 | 44.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 153 | 44.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 226 | 45.25 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 305 | 45.64 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 323 | 45.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 325 | 45.70 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 328 | 45.71 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 427 | 46.13 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 438 | 46.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 457 | 46.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 463 | 46.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 494 | 46.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 505 | 46.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 563 | 46.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 593 | 46.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 596 | 46.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 603 | 46.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 614 | 46.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 660 | 46.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 683 | 47.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 721 | 47.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 808 | 47.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 815 | 47.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 831 | 47.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 840 | 47.63 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 868 | 47.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 961 | 47.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 994 | 47.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |