BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0352400 Os09g0352400|AK065335
         (460 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31660.1  | chr1:11331176-11333440 REVERSE LENGTH=445          399   e-111

>AT1G31660.1 | chr1:11331176-11333440 REVERSE LENGTH=445
          Length = 444

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/428 (48%), Positives = 277/428 (64%), Gaps = 13/428 (3%)

Query: 37  RRRSGASKKHQAEEEASIPSSLSAKILREALTQQQEESLADQRXXXXXXXXXXXXXXXXX 96
           R+RS   K HQ +E+  I + +S KI+++AL QQ+E  +AD+                  
Sbjct: 25  RKRSKVPKTHQKQEKL-IEAGMSEKIMKQALAQQKE--VADEENAERNPSSAAFAVAGAA 81

Query: 97  XXXXXXXXXXXXXXXXXXXXXA---QSEYDGGVPEIDEEDEKALAAFMSKDTSSKRSLGD 153
                                    QS++D    EI+E+DEK   +F++K+   +R+L D
Sbjct: 82  TAGEEQKILEEEEDDIDDFDGTFENQSQFDKQ-EEINEDDEKLFESFLNKNAPPQRTLTD 140

Query: 154 IILEKIREKDAEISTEGRTPVKLDSSIIELYKGVGEFLSRYTSGKIPKGFKRIPSLECWP 213
           II++K+++KDA+++ E R   K+D +I +LYKGVG+F+S YT GK+PK FK + S+E W 
Sbjct: 141 IIIKKLKDKDADLAEEERPDPKMDPAITKLYKGVGKFMSEYTVGKLPKAFKLVTSMEHWE 200

Query: 214 DVLQLTEPENWSPNAVYQATRLFSSNMNAKNAVRFYEAILLPRVRNDIRKNKRLHFALYQ 273
           DVL LTEPE WSPNA+YQATR+F+SN+  +   RFY  +LLPRVR DIRK+K+LHFALYQ
Sbjct: 201 DVLYLTEPEKWSPNALYQATRIFASNLKDRQVQRFYNYVLLPRVREDIRKHKKLHFALYQ 260

Query: 274 SLKKCLYKPAAFFKGILLPLCQERNCTLREAXXXXXXXXXXXXPPLHASAALMKLAEMEY 333
           +LKK LYKP+AF +GIL PLC+   C LREA            P LH+  AL +LAEM+Y
Sbjct: 261 ALKKSLYKPSAFNQGILFPLCKSGTCNLREAVIIGSILEKCSIPMLHSCVALNRLAEMDY 320

Query: 334 CGTTSYFIKLFLDKKYALPYRVVDAVFAHFMRFIDEERVMPVIWHQSLLAFVERYXXXXX 393
           CGTTSYFIK+ L+KKY +PYRV+DA+ AHFMRF+D+ RVMPVIWHQSLL FV+RY     
Sbjct: 321 CGTTSYFIKVLLEKKYCMPYRVLDALVAHFMRFVDDIRVMPVIWHQSLLTFVQRYKYEIL 380

Query: 394 XXXXXXXXXXXDHQKHYLVTPEIRRELRMSCNRGEK-DTIMSICSPVSVITKPIEEDRWN 452
                        QKH+LVTPEI REL+ S NRGEK D ++   +PV     P +EDR++
Sbjct: 381 KEDKEHLQTLLQRQKHHLVTPEILRELKDSRNRGEKEDPMVDNFAPV-----PAKEDRFD 435

Query: 453 VPEVPMEE 460
           +PEVPMEE
Sbjct: 436 IPEVPMEE 443



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,877,386
Number of extensions: 289910
Number of successful extensions: 772
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 358
Effective length of database: 8,310,137
Effective search space: 2975029046
Effective search space used: 2975029046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)