Os09g0338400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7) (m-Nfs1).
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Os09g0338400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7) (m-Nfs1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.32 | 0.227 | 11.8 | 0.985 | 0.768 | 0.047 | -0.458 | -0.915 | 0.128 | 15.6 | 19.87 | 240 | -- | -- |
| 24.91 | 0.232 | 11.8 | 0.89 | 0.775 | 0.268 | -0.248 | -- | 0.127 | 15.7 | 18.4 | 3133 | -- | -- |
| 22.98 | 0.223 | 11.8 | 1.06 | 0.755 | 0.0894 | -- | -1.26 | 0.162 | 15.7 | 19.1 | 1627 | -- | -- |
| 24.61 | 0.231 | 11.8 | 0.997 | 0.765 | 0.344 | -- | -- | 0.137 | 15.6 | 18.4 | 3046 | -- | -- |
| 53.99 | 0.342 | 11.8 | 1.14 | -- | 0.134 | -- | -1.13 | 0.176 | -- | 20 | 2603 | -- | -- |
| 26.58 | 0.242 | 11.8 | 0.807 | 0.756 | -- | -0.132 | -- | 0.0717 | 15.6 | -- | -- | -- | -- |
| 26.63 | 0.242 | 11.8 | 0.805 | 0.755 | -- | -- | -- | 0.071 | 15.6 | -- | -- | -- | -- |
| 54.5 | 0.344 | 11.8 | 1 | -- | 0.501 | -- | -- | 0.172 | -- | 18.6 | 2625 | -- | -- |
| 32.96 | 0.267 | 11.9 | -- | 0.761 | -0.537 | -- | -- | -0.154 | 15.6 | 19.02 | 33969 | -- | -- |
| 58.38 | 0.357 | 11.8 | 0.774 | -- | -- | -- | -- | 0.0509 | -- | -- | -- | -- | -- |
| 43.73 | 0.309 | 11.8 | -- | 0.74 | -- | -- | -- | -0.0187 | 15.6 | -- | -- | -- | -- |
| 63.45 | 0.371 | 11.9 | -- | -- | -0.48 | -- | -- | -0.202 | -- | 22.02 | 47520 | -- | -- |
| 74.17 | 0.402 | 11.8 | -- | -- | -- | -- | -- | -0.035 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 22.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 4 | 22.09 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 2 |
| 5 | 22.09 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 6 | 22.12 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 4 |
| 7 | 22.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 9 | 22.14 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 12 | 22.18 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 13 |
| 13 | 22.18 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 15 |
| 25 | 22.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 36 | 22.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 38 | 22.34 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 40 | 22.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 57 | 22.43 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 5 |
| 59 | 22.44 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 69 | 22.47 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 11 |
| 73 | 22.48 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 76 | 22.50 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 2 |
| 79 | 22.50 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 11 |
| 92 | 22.53 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 9 |
| 94 | 22.54 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 95 | 22.54 | humidity | 60 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 114 | 22.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 139 | 22.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 155 | 22.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 174 | 22.69 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 5 |
| 203 | 22.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 204 | 22.73 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 207 | 22.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 238 | 22.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 247 | 22.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 248 | 22.77 | radiation | 10 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 256 | 22.79 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 277 | 22.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 286 | 22.81 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 339 | 22.87 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 391 | 22.91 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 433 | 22.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 459 | 22.96 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 3 |
| 475 | 22.97 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 5 |
| 484 | 22.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 499 | 22.98 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 22 |
| 505 | 22.99 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 519 | 23.00 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 522 | 23.00 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 3 |
| 538 | 23.01 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 554 | 23.02 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 566 | 23.02 | temperature | 10 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 588 | 23.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 611 | 23.05 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 615 | 23.05 | temperature | 10 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 675 | 23.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 18 |
| 689 | 23.07 | radiation | 10 | 720 | < th | dose independent | rect. | 24 | 21 |
| 699 | 23.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 751 | 23.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 764 | 23.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 799 | 23.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 908 | 23.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 923 | 23.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 926 | 23.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 931 | 23.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 932 | 23.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 2 |
| 935 | 23.16 | humidity | 50 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 972 | 23.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |